Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 3.4e-43 177.9 92 100.0
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 6.5e-42 173.7 92 97.8
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 2.1e-40 168.7 92 96.7
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 8.5e-26 120.2 64 96.9
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 3.0e-23 111.7 64 89.1
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 3.0e-23 111.7 64 89.1
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 5.2e-23 110.9 64 89.1
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 6.8e-23 110.5 64 89.1
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 6.8e-23 110.5 64 89.1
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 4.4e-22 107.8 64 89.1
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 5.7e-22 107.5 64 85.9
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 5.7e-22 107.5 64 85.9
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 7.5e-22 107.1 63 87.3
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 7.5e-22 107.1 64 82.8
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.8e-22 106.7 74 75.7
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.8e-22 106.7 74 75.7
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 1.3e-21 106.3 64 84.4
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 1.3e-21 106.3 64 84.4
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 1.7e-21 105.9 63 85.7
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 1.7e-21 105.9 64 84.4
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 2.2e-21 105.5 63 84.1
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.2e-21 105.5 63 84.1
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 2.2e-21 105.5 64 84.4
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 2.8e-21 105.1 64 82.8
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 2.8e-21 105.1 64 82.8
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 2.8e-21 105.1 64 82.8
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 2.8e-21 105.1 64 79.7
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 2.8e-21 105.1 64 84.4
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 3.7e-21 104.8 64 82.8
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 4.8e-21 104.4 62 85.5
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 4.8e-21 104.4 60 86.7
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 84.4
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 81.2
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 6.3e-21 104.0 61 85.2
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 85.9
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 79.7
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 84.4
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 8.3e-21 103.6 74 74.3
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 8.3e-21 103.6 74 74.3
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 1.1e-20 103.2 64 78.1
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 1.4e-20 102.8 64 82.8
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.8e-20 102.4 74 73.0
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.8e-20 102.4 63 82.5
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 1.8e-20 102.4 64 79.7
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.8e-20 102.4 64 78.1
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 2.4e-20 102.1 64 81.2
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 2.4e-20 102.1 64 78.1
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 3.1e-20 101.7 63 82.5
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 7.0e-20 100.5 63 81.0
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 7.0e-20 100.5 64 78.1
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 9.1e-20 100.1 64 79.7
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 9.1e-20 100.1 61 80.3
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 1.2e-19 99.8 62 82.3
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 1.6e-19 99.4 64 76.6
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 2.0e-19 99.0 64 79.7
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 2.7e-19 98.6 59 84.7
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 2.7e-19 98.6 63 81.0
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 3.5e-19 98.2 63 81.0
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 4.5e-19 97.8 64 78.1
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 4.5e-19 97.8 64 76.6
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 4.5e-19 97.8 64 76.6
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 5.9e-19 97.4 64 78.1
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 5.9e-19 97.4 64 78.1
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 5.9e-19 97.4 64 79.7
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 7.7e-19 97.1 64 78.1
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 7.7e-19 97.1 59 81.4
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 7.7e-19 97.1 62 77.4
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 1.0e-18 96.7 62 79.0
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 1.0e-18 96.7 62 79.0
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 1.0e-18 96.7 60 81.7
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 1.3e-18 96.3 64 76.6
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 1.7e-18 95.9 62 79.0
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 2.2e-18 95.5 64 73.4
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.9e-18 95.1 64 75.0
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 2.9e-18 95.1 64 73.4
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 2.9e-18 95.1 63 76.2
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 3.8e-18 94.7 64 75.0
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 3.8e-18 94.7 62 77.4
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 5.0e-18 94.4 62 77.4
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 6.5e-18 94.0 64 73.4
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 6.5e-18 94.0 64 73.4
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 1.1e-17 93.2 65 73.8
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 1.1e-17 93.2 62 75.8
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 1.5e-17 92.8 63 74.6
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 71.9
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 71.9
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 71.9
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 75.0
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 1.9e-17 92.4 64 73.4
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 1.9e-17 92.4 64 73.4
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 1.9e-17 92.4 64 73.4
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 2.5e-17 92.0 60 76.7
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 2.5e-17 92.0 61 73.8
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 2.5e-17 92.0 64 71.9
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 2.5e-17 92.0 64 71.9
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 2.5e-17 92.0 63 69.8
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 3.2e-17 91.7 64 71.9
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 4.2e-17 91.3 64 71.9
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 4.2e-17 91.3 64 71.9
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 4.2e-17 91.3 64 71.9
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 4.2e-17 91.3 64 71.9
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.5e-17 90.9 58 77.6
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 5.5e-17 90.9 63 73.0
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 9.5e-17 90.1 62 72.6
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 9.5e-17 90.1 63 73.0
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 1.6e-16 89.4 62 72.6
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 1.6e-16 89.4 61 68.9
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 2.1e-16 89.0 63 73.0
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.1e-16 89.0 51 88.2
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 3.6e-16 88.2 63 76.2
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 3.6e-16 88.2 67 68.7
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 3.6e-16 88.2 61 68.9
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 4.7e-16 87.8 62 75.8
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 6.1e-16 87.4 58 77.6
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 6.1e-16 87.4 61 68.9
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 1.4e-15 86.3 63 71.4
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.8e-15 85.9 58 75.9
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 2.3e-15 85.5 72 58.3
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 2.3e-15 85.5 80 52.5
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 6.8e-15 84.0 60 68.3
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 1.5e-14 82.8 62 62.9
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 2.0e-14 82.4 60 75.0
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 3.4e-14 81.6 62 69.4
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 1.1e-12 76.6 71 57.7
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 5.9e-11 70.9 68 58.8
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 1.0e-10 70.1 68 57.4
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 2.3e-10 68.9 68 55.9
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 6.6e-10 67.4 69 56.5
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 6.6e-10 67.4 58 51.7
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 5.6e-09 64.3 72 43.1
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 9.5e-09 63.5 58 46.6
arahy.Tifrunner.gnm1.ann1.JNZ5XH Arachis hypogaea HOM05D000045 ORTHO05D000611 1.0e-07 60.1 62 61.3
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.4e-07 59.7 63 42.9
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 1.4e-07 59.7 58 44.8
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 1.4e-07 59.7 58 43.1
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 4.0e-07 58.2 64 43.8
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 5.2e-07 57.8 69 44.9
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 8.9e-07 57.0 63 42.9
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 1.2e-06 56.6 58 39.7
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 3.4e-06 55.1 80 37.5
FvH4_6g00152 Fragaria vesca HOM05D000045 ORTHO05D000611 4.4e-06 54.7 69 43.5
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 5.7e-06 54.3 80 36.2
QL01p047769 Quercus lobata HOM05D000045 ORTHO05D000611 5.7e-06 54.3 60 43.3
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 5.7e-06 54.3 64 45.3
GSVIVG01010762001 Vitis vinifera HOM05D000045 ORTHO05D000611 5.7e-06 54.3 64 42.2


User provided reference genes

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