Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 1.7e-42 175.6 92 100.0
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 1.6e-40 169.1 92 96.7
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 3.0e-39 164.9 92 94.6
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 9.4e-25 116.7 64 95.3
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 3.4e-22 108.2 64 87.5
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.4e-22 108.2 77 79.2
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.4e-22 108.2 77 79.2
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 3.4e-22 108.2 64 87.5
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 5.7e-22 107.5 64 87.5
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 5.7e-22 107.5 63 87.3
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 1.3e-21 106.3 63 85.7
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.7e-21 105.9 77 74.0
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 2.8e-21 105.1 77 76.6
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.7e-21 104.8 75 73.3
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.7e-21 104.8 75 73.3
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 4.8e-21 104.4 64 87.5
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 84.4
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 85.9
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 6.3e-21 104.0 64 84.4
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 1.1e-20 103.2 64 82.8
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 1.1e-20 103.2 64 82.8
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 1.4e-20 102.8 64 82.8
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 1.4e-20 102.8 64 82.8
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.4e-20 102.8 63 82.5
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 1.4e-20 102.8 62 85.5
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 1.4e-20 102.8 60 86.7
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 1.4e-20 102.8 64 82.8
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 1.8e-20 102.4 63 82.5
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.8e-20 102.4 63 82.5
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 2.4e-20 102.1 63 82.5
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 2.4e-20 102.1 64 82.8
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.1e-20 101.7 75 72.0
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.1e-20 101.7 75 72.0
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 3.1e-20 101.7 74 74.3
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 3.1e-20 101.7 64 81.2
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 3.1e-20 101.7 64 78.1
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 3.1e-20 101.7 64 82.8
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.1e-20 101.3 77 71.4
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 5.4e-20 100.9 77 68.8
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.4e-20 100.9 63 81.0
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 7.0e-20 100.5 64 82.8
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 7.0e-20 100.5 75 70.7
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 7.0e-20 100.5 77 72.7
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 7.0e-20 100.5 64 78.1
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 7.0e-20 100.5 64 82.8
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 7.0e-20 100.5 75 73.3
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 9.1e-20 100.1 77 70.1
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 1.2e-19 99.8 77 71.4
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.2e-19 99.8 77 68.8
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 2.0e-19 99.0 59 84.7
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 2.0e-19 99.0 63 81.0
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 2.7e-19 98.6 64 76.6
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.7e-19 98.6 63 81.0
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 4.5e-19 97.8 77 68.8
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 5.9e-19 97.4 59 81.4
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 5.9e-19 97.4 77 70.1
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 7.7e-19 97.1 61 78.7
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 7.7e-19 97.1 60 81.7
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 1.0e-18 96.7 77 71.4
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 1.0e-18 96.7 77 67.5
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 1.3e-18 96.3 62 79.0
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 2.2e-18 95.5 64 73.4
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 2.2e-18 95.5 77 68.8
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 2.2e-18 95.5 75 69.3
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 2.9e-18 95.1 75 68.0
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 2.9e-18 95.1 77 67.5
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 2.9e-18 95.1 77 67.5
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 3.8e-18 94.7 77 70.1
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 3.8e-18 94.7 77 66.2
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 6.5e-18 94.0 64 76.6
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 6.5e-18 94.0 64 76.6
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 6.5e-18 94.0 77 67.5
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 8.5e-18 93.6 62 77.4
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 8.5e-18 93.6 64 76.6
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 8.5e-18 93.6 62 77.4
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 8.5e-18 93.6 62 75.8
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 8.5e-18 93.6 77 67.5
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 1.1e-17 93.2 65 73.8
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 1.1e-17 93.2 64 75.0
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 73.4
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 73.4
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.5e-17 92.8 62 77.4
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 1.5e-17 92.8 64 73.4
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 1.9e-17 92.4 61 73.8
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 2.5e-17 92.0 60 76.7
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 2.5e-17 92.0 64 71.9
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.5e-17 92.0 64 73.4
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 2.5e-17 92.0 63 74.6
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 3.2e-17 91.7 64 71.9
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 3.2e-17 91.7 64 71.9
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 3.2e-17 91.7 64 71.9
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 3.2e-17 91.7 64 71.9
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 4.2e-17 91.3 58 77.6
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 5.5e-17 90.9 64 71.9
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 5.5e-17 90.9 64 71.9
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 5.5e-17 90.9 64 71.9
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 7.2e-17 90.5 77 64.9
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 1.2e-16 89.7 64 70.3
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 1.2e-16 89.7 64 70.3
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 1.2e-16 89.7 64 70.3
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 1.2e-16 89.7 61 68.9
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 1.6e-16 89.4 63 73.0
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 1.6e-16 89.4 63 73.0
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 2.1e-16 89.0 64 70.3
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 2.1e-16 89.0 63 68.3
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 2.8e-16 88.6 63 73.0
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 4.7e-16 87.8 58 77.6
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 6.1e-16 87.4 61 68.9
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 8.0e-16 87.0 62 71.0
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.0e-15 86.7 61 68.9
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 1.0e-15 86.7 63 71.4
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 1.0e-15 86.7 64 75.0
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 1.4e-15 86.3 62 71.0
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 1.4e-15 86.3 67 67.2
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.4e-15 86.3 58 75.9
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 1.8e-15 85.9 76 67.1
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.3e-15 85.5 75 66.7
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 5.2e-15 84.3 60 68.3
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.2e-14 83.2 63 58.7
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 1.5e-14 82.8 60 75.0
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 2.0e-14 82.4 72 56.9
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 4.4e-14 81.3 62 69.4
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 4.4e-14 81.3 62 62.9
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 1.2e-11 73.2 71 56.3
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 5.0e-10 67.8 68 57.4
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 8.6e-10 67.0 68 55.9
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 1.9e-09 65.9 68 54.4
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 5.6e-09 64.3 69 55.1
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 5.6e-09 64.3 58 50.0
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 4.7e-08 61.2 72 41.7
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 8.0e-08 60.5 58 44.8
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 3.0e-07 58.5 69 40.6
arahy.Tifrunner.gnm1.ann1.JNZ5XH Arachis hypogaea HOM05D000045 ORTHO05D000611 8.9e-07 57.0 62 59.7
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.2e-06 56.6 63 41.3
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 1.2e-06 56.6 58 43.1
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 4.4e-06 54.7 64 42.2
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 4.4e-06 54.7 69 43.5
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 5.7e-06 54.3 69 39.1
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 9.8e-06 53.5 58 37.9
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 9.8e-06 53.5 69 37.7
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 9.8e-06 53.5 63 41.3


User provided reference genes

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