Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p054376 Quercus lobata HOM05D024689 ORTHO05D002405 1.7e-194 682.6 354 100.0
QL01p053962 Quercus lobata HOM05D024689 ORTHO05D002405 3.5e-184 648.3 406 85.7
QL01p054108 Quercus lobata HOM05D024689 ORTHO05D002405 1.2e-131 473.8 260 94.6
QL93p0356_0080 Quercus lobata HOM05D001944 ORTHO05D002405 6.9e-100 368.2 474 51.3
QL93p0107_0420 Quercus lobata HOM05D024689 ORTHO05D002405 6.1e-88 328.6 466 48.3
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 2.1e-24 117.5 163 47.9
QL01p054326 Quercus lobata HOM05D024689 ORTHO05D002405 4.9e-21 106.3 56 98.2
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 7.3e-17 92.4 190 37.9
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 4.7e-16 89.7 111 50.5
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 8.1e-16 89.0 201 37.8
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.2e-14 85.1 201 35.3
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.2e-14 85.1 201 35.3
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 2.0e-14 84.3 106 47.2
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.6e-14 84.0 201 34.3
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 2.6e-14 84.0 201 35.8
VMungo1080G0782 Vigna mungo HOM05D001944 ORTHO05D002405 3.4e-14 83.6 105 41.0
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 4.4e-14 83.2 106 44.3
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 4.4e-14 83.2 170 35.9
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 5.8e-14 82.8 142 40.8
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 5.8e-14 82.8 142 40.1
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 9.9e-14 82.0 174 37.9
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.3e-13 81.6 170 36.5
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 2.2e-13 80.9 142 39.4
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 3.8e-13 80.1 105 41.0
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.8e-13 80.1 201 35.3
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 3.8e-13 80.1 201 35.3
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.8e-13 80.1 151 37.7
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 3.8e-13 80.1 105 39.0
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 6.4e-13 79.3 109 41.3
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 6.4e-13 79.3 75 54.7
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 8.4e-13 79.0 170 35.9
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 8.4e-13 79.0 107 44.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 8.4e-13 79.0 120 40.8
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 1.1e-12 78.6 170 35.9
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.1e-12 78.6 170 35.9
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 1.1e-12 78.6 105 40.0
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.9e-12 77.8 201 34.8
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 1.9e-12 77.8 106 42.5
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 3.2e-12 77.0 102 44.1
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 3.2e-12 77.0 109 41.3
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 4.2e-12 76.6 106 44.3
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 5.4e-12 76.3 107 43.9
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 9.3e-12 75.5 206 32.0
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 9.3e-12 75.5 206 32.0
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 9.3e-12 75.5 106 42.5
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 9.3e-12 75.5 107 44.9
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 9.3e-12 75.5 107 44.9
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 9.3e-12 75.5 107 44.9
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 9.3e-12 75.5 113 39.8
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 9.3e-12 75.5 108 41.7
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 9.3e-12 75.5 108 39.8
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.2e-11 75.1 105 41.0
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.2e-11 75.1 107 42.1
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 1.6e-11 74.7 143 40.6
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.1e-11 74.3 255 30.2
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 2.1e-11 74.3 83 45.8
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 2.1e-11 74.3 81 46.9
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.1e-11 74.3 107 43.0
Lj2A114T42 Lonicera japonica HOM05D001944 ORTHO05D002405 2.7e-11 73.9 106 40.6
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 2.7e-11 73.9 167 33.5
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 4.6e-11 73.2 109 41.3
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 4.6e-11 73.2 109 38.5
Sed0024099 Sechium edule HOM05D001944 ORTHO05D002405 4.6e-11 73.2 85 48.2
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 4.6e-11 73.2 84 47.6
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 4.6e-11 73.2 174 36.8
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 6.0e-11 72.8 95 40.0
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 7.8e-11 72.4 106 41.5
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 7.8e-11 72.4 148 36.5
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 7.8e-11 72.4 148 36.5
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 1.0e-10 72.0 107 39.3
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.0e-10 72.0 107 41.1
arahy.Tifrunner.gnm1.ann1.LUG37R Arachis hypogaea HOM05D001944 ORTHO05D002405 1.7e-10 71.2 106 40.6
arahy.Tifrunner.gnm1.ann1.R0WL9G Arachis hypogaea HOM05D001944 ORTHO05D002405 1.7e-10 71.2 106 40.6
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 1.7e-10 71.2 379 27.4
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 1.7e-10 71.2 107 41.1
unitig_21.g20905 Utricularia gibba HOM05D001944 ORTHO05D002405 1.7e-10 71.2 140 35.0
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.3e-10 70.9 79 45.6
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 2.3e-10 70.9 78 47.4
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.0e-10 70.5 77 46.8
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 3.0e-10 70.5 95 38.9
CDE02G2939 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 3.9e-10 70.1 110 40.9
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 3.9e-10 70.1 107 41.1
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 5.1e-10 69.7 79 44.3
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 5.1e-10 69.7 81 44.4
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 6.6e-10 69.3 106 40.6
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 6.6e-10 69.3 79 45.6
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 6.6e-10 69.3 79 45.6
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 6.6e-10 69.3 106 37.7
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 6.6e-10 69.3 109 37.6
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 8.7e-10 68.9 79 49.4
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 8.7e-10 68.9 95 38.9
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 8.7e-10 68.9 78 47.4
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 1.1e-09 68.6 202 32.7
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.1e-09 68.6 128 35.2
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.5e-09 68.2 128 35.2
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.9e-09 67.8 172 31.4
Ca_08850_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.9e-09 67.8 78 47.4
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 1.9e-09 67.8 81 44.4
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 2.5e-09 67.4 142 33.1
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.5e-09 67.4 106 39.6
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 2.5e-09 67.4 143 35.0
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 2.5e-09 67.4 112 36.6
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 3.3e-09 67.0 109 38.5
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 4.3e-09 66.6 108 36.1
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 4.3e-09 66.6 107 40.2
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 4.3e-09 66.6 114 36.0
SEGI_24058 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 4.3e-09 66.6 108 40.7
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 4.3e-09 66.6 78 47.4
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 5.6e-09 66.2 202 31.7
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 5.6e-09 66.2 201 29.4
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 7.3e-09 65.9 128 34.4
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 9.6e-09 65.5 83 42.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 9.6e-09 65.5 86 44.2
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 9.6e-09 65.5 78 47.4
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 9.6e-09 65.5 142 32.4
PSO732G0800 Papaver somniferum HOM05D001944 ORTHO05D002405 9.6e-09 65.5 94 41.5
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 1.3e-08 65.1 116 38.8
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.6e-08 64.7 81 44.4
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.6e-08 64.7 81 44.4
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 2.1e-08 64.3 81 43.2
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 3.6e-08 63.5 102 37.3
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 3.6e-08 63.5 81 43.2
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 3.6e-08 63.5 81 43.2
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.6e-08 63.5 92 41.3
Phvul.001G177901 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 4.8e-08 63.2 102 40.2
Psat0s3521g0040 Pisum sativum HOM05D001944 ORTHO05D002405 4.8e-08 63.2 103 35.0
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 6.2e-08 62.8 102 37.3
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 6.2e-08 62.8 263 26.2
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 6.2e-08 62.8 394 25.1
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 8.1e-08 62.4 81 42.0
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 8.1e-08 62.4 81 42.0
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 8.1e-08 62.4 111 35.1
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 1.1e-07 62.0 81 40.7
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 1.1e-07 62.0 82 41.5
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 1.1e-07 62.0 78 43.6
Psat0s1467g0160 Pisum sativum HOM05D001465 ORTHO05D002405 1.1e-07 62.0 103 35.9
PSO675G2075 Papaver somniferum HOM05D001944 ORTHO05D002405 1.4e-07 61.6 94 39.4
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 1.8e-07 61.2 107 37.4
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 2.4e-07 60.8 78 46.2
DCAR_020831 Daucus carota HOM05D001944 ORTHO05D002405 4.0e-07 60.1 103 34.0
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.0e-07 60.1 114 33.3
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 6.9e-07 59.3 171 34.5
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 6.9e-07 59.3 78 39.7
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 9.0e-07 58.9 79 43.0
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.2e-06 58.5 108 34.3
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.5e-06 58.2 108 36.1
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 2.6e-06 57.4 148 34.5
PSO732G0413 Papaver somniferum HOM05D001944 ORTHO05D002405 3.4e-06 57.0 94 40.4
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 5.8e-06 56.2 102 35.3
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 5.8e-06 56.2 179 33.0
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 5.8e-06 56.2 83 38.6
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 7.6e-06 55.8 107 34.6
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 9.9e-06 55.5 81 39.5


User provided reference genes

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