Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 0.0e+00 1409.4 807 100.0
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 0.0e+00 1407.1 807 99.9
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.2e-277 959.9 882 65.4
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 7.7e-272 940.6 496 98.2
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 6.1e-269 931.0 812 67.5
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 2.6e-243 845.9 815 65.3
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 8.6e-239 830.9 821 64.2
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-228 797.3 817 61.7
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 5.2e-228 795.0 818 62.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.2e-227 793.9 824 62.4
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.0e-227 793.1 825 62.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 9.9e-227 790.8 818 61.7
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 9.9e-227 790.8 796 62.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.1e-225 787.3 817 62.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.4e-225 786.2 822 61.3
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.7e-223 780.0 818 61.4
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 2.6e-219 766.1 817 60.3
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.8e-219 765.0 820 61.0
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.1e-217 760.8 817 59.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.3e-214 749.2 826 59.4
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.6e-213 746.9 830 59.0
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.1e-212 744.2 817 59.9
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.8e-212 743.4 826 59.4
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 6.9e-212 741.5 797 60.1
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.0e-211 740.0 823 60.8
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.6e-211 739.6 843 58.7
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.9e-210 736.1 852 55.3
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 9.3e-209 731.1 832 61.5
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 9.3e-209 731.1 827 58.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-208 729.2 834 59.5
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.0e-207 727.6 830 51.8
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.7e-207 726.9 813 60.1
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 9.6e-206 721.1 803 58.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.3e-205 720.7 820 60.1
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.3e-205 720.7 781 54.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.4e-204 717.2 817 58.5
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 8.4e-202 708.0 817 50.9
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.2e-201 706.1 820 56.5
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 1.2e-200 704.1 831 51.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.1e-200 703.4 838 58.2
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.3e-199 700.7 826 56.7
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.9e-199 699.1 829 58.7
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.7e-199 698.4 829 58.6
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 3.3e-198 696.0 830 51.6
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 3.7e-197 692.6 797 58.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.1e-196 691.0 833 55.8
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.3e-196 688.7 822 56.2
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 5.3e-196 688.7 820 56.2
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 9.0e-196 688.0 822 56.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.5e-195 687.2 828 57.4
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 4.5e-195 685.6 834 56.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.2e-193 679.5 859 54.0
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 7.9e-192 674.9 771 60.1
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.9e-191 672.5 818 53.5
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 6.7e-191 671.8 825 52.2
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.9e-190 670.2 828 56.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 7.4e-190 668.3 812 48.3
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 2.1e-189 666.8 826 55.2
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 2.8e-189 666.4 822 55.0
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.0e-188 662.5 681 62.8
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.0e-187 660.2 860 50.3
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.0e-187 660.2 799 50.8
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.6e-187 659.8 791 54.9
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 7.1e-185 651.7 806 49.8
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 9.3e-185 651.4 820 51.7
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 7.9e-184 648.3 807 54.8
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.3e-183 647.5 808 51.7
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.5e-182 643.3 846 52.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 4.3e-182 642.5 813 54.1
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.7e-182 642.1 826 53.6
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.9e-180 635.2 806 54.3
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 1.2e-179 634.4 858 47.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 7.6e-179 631.7 825 48.6
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.1e-177 627.9 800 48.2
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.4e-177 627.5 788 55.1
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 4.2e-177 625.9 821 54.4
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.5e-177 625.5 824 53.0
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.5e-177 625.5 818 54.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 4.6e-176 622.5 769 49.7
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.0e-175 621.3 762 54.7
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.4e-175 620.9 820 53.4
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.0e-175 619.8 800 52.8
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 3.3e-174 616.3 676 59.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.3e-173 614.4 684 60.1
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.3e-173 614.4 821 52.1
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.3e-170 604.4 801 53.8
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.3e-170 604.4 799 54.6
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 6.5e-170 602.1 806 54.6
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 7.9e-168 595.1 819 53.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 5.7e-166 589.0 824 52.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.0e-163 580.5 814 51.0
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.1e-161 574.7 798 51.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 3.6e-160 569.7 798 51.8
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.9e-159 566.2 942 46.7
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 4.4e-158 562.8 784 51.7
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 4.4e-158 562.8 792 52.4
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.3e-157 561.2 784 51.5
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 5.7e-150 535.8 747 53.8
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.2e-149 533.9 818 45.8
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 9.8e-142 508.4 829 49.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.5e-131 473.0 481 54.5
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 7.5e-126 455.7 872 43.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 9.5e-121 438.7 868 42.9
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 6.8e-119 432.6 860 40.8
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 7.8e-115 419.1 805 44.6
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 9.5e-113 412.1 767 44.3
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.2e-112 411.8 883 39.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.7e-98 364.8 848 40.1
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 5.3e-95 353.2 812 36.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 4.5e-86 323.6 496 42.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.1e-84 318.9 574 46.7
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.2e-84 317.4 241 69.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.1e-83 314.7 496 42.5
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 6.2e-80 303.1 572 37.2
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 4.8e-72 276.9 810 30.6
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.9e-60 238.4 475 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.5e-52 211.5 794 30.6
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 9.1e-47 193.0 198 54.0
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.8e-40 171.4 380 33.9
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 5.9e-38 163.7 444 32.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 6.5e-37 160.2 696 32.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 3.6e-35 154.5 185 47.0
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.7e-32 144.4 112 61.6
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 5.9e-30 137.1 224 35.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 2.1e-27 128.6 140 51.4
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 9.8e-25 119.8 156 46.2
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.1e-23 114.8 175 41.1
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.6e-17 95.1 74 59.5
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.8e-15 89.0 70 60.0
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.7e-13 82.4 109 46.8
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 7.3e-12 77.0 157 38.2
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.3e-08 66.2 65 53.8
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 8.3e-08 63.5 47 63.8
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.1e-07 63.2 60 55.0
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 2.4e-07 62.0 82 40.2
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 2.4e-07 62.0 62 53.2
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 5.4e-07 60.8 161 31.1
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 7.0e-07 60.5 61 50.8
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 3.5e-06 58.2 55 54.5
MCO02G251 Micromonas commoda HOM05D005855 ORTHO05D006406 7.8e-06 57.0 324 25.6


User provided reference genes

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