Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 1.2e-138 496.5 253 100.0
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 6.7e-97 357.8 297 66.3
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 2.2e-79 299.7 299 58.5
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 4.2e-75 285.4 297 54.9
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 7.2e-75 284.6 297 55.2
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 3.2e-67 259.2 296 50.7
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 1.2e-64 250.8 302 48.0
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 1.3e-63 247.3 299 49.2
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 1.3e-63 247.3 299 49.2
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 1.7e-63 246.9 302 47.0
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 1.7e-63 246.9 302 46.7
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 1.6e-61 240.4 302 46.4
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 8.5e-60 234.6 327 43.1
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 4.2e-59 232.3 298 45.6
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 1.5e-56 223.8 251 53.0
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 3.4e-56 222.6 297 45.1
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 1.8e-54 216.9 302 43.0
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.2e-53 214.2 297 44.4
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 1.6e-53 213.8 295 43.7
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 1.0e-52 211.1 298 43.0
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 3.8e-52 209.1 298 42.3
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 3.8e-52 209.1 298 44.3
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 1.5e-51 207.2 292 43.2
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 3.3e-51 206.1 298 43.6
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 3.3e-51 206.1 295 43.4
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 4.2e-51 205.7 299 42.8
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 4.2e-51 205.7 294 42.9
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 4.2e-51 205.7 297 42.4
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 5.5e-51 205.3 307 41.4
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 7.2e-51 204.9 326 41.7
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 9.5e-51 204.5 298 41.9
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 1.2e-50 204.1 294 42.5
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 1.2e-50 204.1 250 47.6
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 1.6e-50 203.8 294 42.9
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 2.1e-50 203.4 298 42.3
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 4.7e-50 202.2 298 43.3
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 8.0e-50 201.4 292 42.5
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 8.0e-50 201.4 294 43.9
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 1.0e-49 201.1 298 43.0
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 1.8e-49 200.3 298 41.3
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 2.3e-49 199.9 295 42.4
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 4.0e-49 199.1 294 42.2
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 5.2e-49 198.7 297 41.4
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 5.2e-49 198.7 298 42.6
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 6.8e-49 198.4 292 41.8
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 8.9e-49 198.0 298 38.9
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 1.5e-48 197.2 298 39.9
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 1.5e-48 197.2 292 42.5
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 2.0e-48 196.8 298 39.6
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 2.0e-48 196.8 298 40.3
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 3.4e-48 196.1 304 40.5
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 9.8e-48 194.5 298 39.6
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 9.8e-48 194.5 298 39.6
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 9.8e-48 194.5 298 39.6
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 9.8e-48 194.5 298 40.9
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 1.3e-47 194.1 298 39.6
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 1.3e-47 194.1 291 42.3
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 1.7e-47 193.7 295 41.4
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 1.7e-47 193.7 295 41.4
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 1.7e-47 193.7 298 39.9
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 2.8e-47 193.0 262 41.2
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 4.9e-47 192.2 294 41.5
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 6.3e-47 191.8 298 39.6
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 8.3e-47 191.4 298 39.6
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 1.1e-46 191.0 307 40.1
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.1e-46 191.0 291 41.6
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 1.1e-46 191.0 263 42.6
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 1.8e-46 190.3 298 39.6
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 3.1e-46 189.5 300 40.3
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 4.1e-46 189.1 298 38.9
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 9.2e-46 188.0 298 39.3
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 2.7e-45 186.4 296 39.5
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 4.5e-45 185.7 297 39.4
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 1.3e-44 184.1 299 39.1
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.7e-44 183.7 298 40.3
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 1.7e-44 183.7 297 39.1
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 3.8e-44 182.6 299 38.8
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 1.1e-43 181.0 299 38.5
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 1.9e-43 180.3 299 38.8
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.3e-43 179.1 308 37.3
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 5.6e-43 178.7 308 37.0
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 1.2e-42 177.6 298 37.9
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 1.6e-42 177.2 304 38.5
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 2.1e-42 176.8 293 37.5
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 6.1e-42 175.3 254 42.1
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 2.3e-41 173.3 285 38.2
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 1.2e-40 171.0 293 36.5
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 2.0e-40 170.2 298 37.2
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 2.6e-40 169.9 298 36.9
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 2.6e-40 169.9 251 45.4
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 4.4e-40 169.1 297 35.7
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 9.8e-40 167.9 303 35.6
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 1.3e-39 167.5 304 40.8
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.3e-39 167.5 304 40.8
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 2.2e-39 166.8 297 37.0
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 2.9e-39 166.4 297 38.0
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 3.7e-39 166.0 297 38.7
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 6.4e-39 165.2 297 38.4
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 6.4e-39 165.2 291 42.3
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 1.4e-38 164.1 298 41.3
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 5.4e-38 162.2 300 37.0
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 5.4e-38 162.2 251 43.4
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.6e-37 160.6 301 38.9
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.6e-37 160.6 307 34.9
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.0e-37 160.2 301 38.5
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.0e-37 160.2 301 38.9
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 6.6e-36 155.2 297 35.7
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 2.1e-34 150.2 294 35.4
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 6.2e-34 148.7 299 34.4
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 1.4e-33 147.5 303 33.3
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 1.8e-33 147.1 327 31.5
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 3.4e-32 142.9 299 32.4
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 4.4e-32 142.5 327 31.2
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.9e-30 137.1 298 31.2
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 5.4e-30 135.6 300 32.3
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 7.8e-29 131.7 298 32.2
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 5.6e-27 125.6 239 38.9
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 4.7e-26 122.5 231 36.4
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 8.1e-26 121.7 293 33.8
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 2.6e-24 116.7 321 31.5
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 4.9e-23 112.5 273 32.6
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 7.1e-22 108.6 318 27.7
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 7.8e-21 105.1 300 29.3
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 8.6e-20 101.7 74 66.2
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 1.5e-19 100.9 291 32.0
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-14 84.3 310 26.8
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.6e-11 72.4 239 26.8
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 3.6e-10 69.7 120 37.5
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-08 64.7 51 54.9


User provided reference genes

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