Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.4e-77 291.6 148 100.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-46 189.5 141 73.0
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-46 188.7 141 72.3
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 5.0e-44 181.4 142 72.5
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 8.6e-44 180.6 143 67.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-43 179.5 142 72.5
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 7.2e-43 177.6 151 64.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-38 161.8 146 63.7
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-37 160.2 145 65.5
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 8.6e-36 154.1 141 59.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.5e-35 152.5 141 56.0
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.3e-35 152.1 144 62.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 9.5e-35 150.6 145 56.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 9.5e-35 150.6 141 59.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-33 146.7 141 61.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.8e-33 146.4 139 56.8
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.0e-33 145.6 142 55.6
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.0e-33 145.2 142 55.6
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.2e-32 143.7 119 62.2
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.5e-32 143.3 117 64.1
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.5e-32 143.3 118 62.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 3.4e-32 142.1 141 55.3
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 4.4e-32 141.7 146 55.5
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.8e-32 141.4 117 62.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 5.8e-32 141.4 142 54.2
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.8e-32 141.4 133 54.9
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 7.5e-32 141.0 114 64.0
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 7.5e-32 141.0 142 54.9
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.7e-31 139.8 117 61.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.2e-31 139.4 119 58.8
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.9e-31 139.0 117 60.7
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.9e-31 139.0 117 60.7
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.9e-31 138.3 119 58.0
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.9e-31 138.3 119 58.0
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 4.9e-31 138.3 117 60.7
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.3e-31 137.5 136 52.9
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.3e-31 137.5 145 58.6
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.1e-30 137.1 119 59.7
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.1e-30 137.1 117 59.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.1e-30 137.1 85 74.1
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.9e-30 136.3 144 52.1
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.9e-30 136.3 149 51.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.9e-30 136.3 141 56.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 1.9e-30 136.3 141 54.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 3.2e-30 135.6 119 58.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 3.2e-30 135.6 137 54.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 4.1e-30 135.2 145 55.2
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 9.2e-30 134.0 93 72.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.6e-29 133.3 119 58.0
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.6e-29 133.3 138 54.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-29 133.3 143 51.7
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-29 133.3 143 51.7
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.0e-29 132.9 120 59.2
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-29 132.9 144 51.4
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 2.0e-29 132.9 141 53.9
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 2.7e-29 132.5 119 55.5
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.5e-29 132.1 83 72.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 6.0e-29 131.3 141 51.1
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 7.8e-29 131.0 118 59.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 7.8e-29 131.0 81 72.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 7.8e-29 131.0 84 72.6
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.0e-28 130.6 144 50.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.0e-28 130.6 133 55.6
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.0e-28 130.6 83 73.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.7e-28 129.8 148 49.3
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 3.0e-28 129.0 83 69.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.0e-28 129.0 142 50.7
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.9e-28 128.6 119 55.5
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 3.9e-28 128.6 136 51.5
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.0e-28 128.3 82 73.2
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 5.0e-28 128.3 143 54.5
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 6.6e-28 127.9 142 50.7
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.1e-27 127.1 117 54.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-27 127.1 138 53.6
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 2.5e-27 125.9 131 50.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.5e-27 125.9 141 47.5
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 3.3e-27 125.6 86 66.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 5.6e-27 124.8 118 54.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.3e-27 124.4 84 67.9
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.3e-27 124.4 84 65.5
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 9.5e-27 124.0 142 49.3
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.5e-27 124.0 141 47.5
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.2e-26 123.6 142 49.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.1e-26 122.9 141 47.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.6e-26 122.1 86 64.0
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 3.6e-26 122.1 120 51.7
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 4.7e-26 121.7 137 48.9
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 6.2e-26 121.3 87 65.5
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 6.2e-26 121.3 142 50.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 6.2e-26 121.3 119 53.8
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 6.2e-26 121.3 87 65.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 8.0e-26 120.9 142 47.9
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.1e-25 120.6 150 48.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.1e-25 120.6 73 74.0
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.4e-25 120.2 83 67.5
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.4e-25 120.2 142 50.0
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.4e-25 120.2 100 59.0
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-25 120.2 83 65.1
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-25 119.8 142 47.9
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.8e-25 119.8 142 47.9
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.8e-25 119.8 142 47.9
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.8e-25 119.8 139 48.2
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.8e-25 119.8 114 54.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 2.3e-25 119.4 78 69.2
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 3.1e-25 119.0 143 47.6
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 3.1e-25 119.0 143 47.6
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.1e-25 119.0 142 48.6
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.1e-25 119.0 71 74.6
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.0e-25 118.6 140 47.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.2e-25 118.2 74 73.0
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.2e-25 118.2 142 49.3
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.8e-25 117.9 142 49.3
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 6.8e-25 117.9 86 64.0
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.9e-25 117.5 83 65.1
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.0e-24 116.3 143 49.0
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.6e-24 115.9 83 63.9
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.4e-24 115.5 87 62.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 3.4e-24 115.5 142 48.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.4e-24 115.2 142 50.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.4e-24 115.2 142 50.0
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.4e-24 115.2 142 50.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.3e-23 113.6 72 68.1
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-23 113.2 116 53.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-23 113.2 116 53.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-23 113.2 142 48.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-23 113.2 142 48.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.2e-22 109.0 70 65.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.4e-22 108.2 95 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.7e-20 103.2 141 41.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.5e-19 100.1 115 44.3
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 7.3e-19 97.8 86 55.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.4e-17 93.6 115 51.3
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 6.8e-17 91.3 76 59.2
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.4e-16 88.6 56 67.9
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 7.5e-16 87.8 45 80.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 7.5e-16 87.8 61 62.3
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.3e-15 84.3 44 77.3
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 5.8e-08 61.6 53 50.9
QL03p071975 Quercus lobata HOM05D001391 ORTHO05D000058 2.9e-07 59.3 38 78.9
QL03p071850 Quercus lobata HOM05D001391 ORTHO05D337718 3.8e-07 58.9 72 55.6
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 9.2e-06 54.3 39 64.1


User provided reference genes

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