Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p050680 Quercus lobata HOM05D001336 ORTHO05D001211 9.2e-62 240.0 115 100.0
Cfa006300 Carpinus fangiana HOM05D001336 ORTHO05D001211 3.4e-16 88.6 58 69.0
Lalb_Chr19g0126841 Lupinus albus HOM05D001336 ORTHO05D001211 1.0e-15 87.0 68 63.2
QL93p1902_0177 Quercus lobata HOM05D000005 ORTHO05D002559 1.1e-14 83.6 56 76.8
Glyma.09G252900 Glycine max HOM05D001336 ORTHO05D001211 2.7e-13 79.0 77 57.1
CiPaw.07G076100 Carya illinoinensis HOM05D001336 ORTHO05D001211 6.1e-13 77.8 65 58.5
Cpa.g.sc8.181 Carica papaya HOM05D001336 ORTHO05D001211 7.9e-13 77.4 58 69.0
Ciclev10011454m.g Citrus clementina HOM05D001336 ORTHO05D001211 5.1e-12 74.7 63 58.7
Lj1g0002188 Lotus japonicus HOM05D001336 ORTHO05D001211 6.7e-12 74.3 65 61.5
SGA_v2.0_scaffold3G01580 Striga asiatica HOM05D001336 ORTHO05D001211 8.8e-12 73.9 65 60.0
Haze_04509 Corylus avellana HOM05D001336 ORTHO05D001211 1.5e-11 73.2 60 58.3
COL.COLO4_27423 Corchorus olitorius HOM05D001336 ORTHO05D001211 2.0e-11 72.8 57 66.7
MELO3C012787.2 Cucumis melo HOM05D001336 ORTHO05D001211 2.0e-11 72.8 58 62.1
FAN14G0560 Fragaria x ananassa HOM05D001336 ORTHO05D001211 2.0e-11 72.8 66 56.1
MSTRG.12500 Avicennia marina HOM05D001336 ORTHO05D001211 2.5e-11 72.4 58 63.8
FvH4_6g00960 Fragaria vesca HOM05D001336 ORTHO05D001211 2.5e-11 72.4 66 56.1
Lj2C52T16 Lonicera japonica HOM05D001336 ORTHO05D001211 2.5e-11 72.4 62 61.3
Manes.13G044100 Manihot esculenta HOM05D001336 ORTHO05D001211 2.5e-11 72.4 58 65.5
CSS0031042 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 3.3e-11 72.0 58 63.8
CsaV3_3G028750 Cucumis sativus L. HOM05D001336 ORTHO05D001211 4.3e-11 71.6 58 62.1
Glyma.18G239800 Glycine max HOM05D001336 ORTHO05D001211 5.7e-11 71.2 62 62.9
Gohir.D08G244700 Gossypium hirsutum HOM05D001336 ORTHO05D001211 5.7e-11 71.2 65 56.9
Gorai.004G261100 Gossypium raimondii HOM05D001336 ORTHO05D001211 5.7e-11 71.2 65 56.9
Oeu062016.3 Olea europaea HOM05D001336 ORTHO05D001211 5.7e-11 71.2 61 54.1
SalBow2G3184 Salvia bowleyana HOM05D001336 ORTHO05D001211 5.7e-11 71.2 58 63.8
Gohir.A08G224400 Gossypium hirsutum HOM05D001336 ORTHO05D001211 7.4e-11 70.9 65 58.5
Thecc.05G202400 Theobroma cacao HOM05D001336 ORTHO05D001211 7.4e-11 70.9 56 64.3
FAN09G4179 Fragaria x ananassa HOM05D001336 ORTHO05D001211 9.7e-11 70.5 66 54.5
PGR083G0543 Punica granatum HOM05D001336 ORTHO05D001211 1.3e-10 70.1 57 63.2
Peaxi162Scf00052g00098 Petunia axillaris HOM05D001336 ORTHO05D001211 1.7e-10 69.7 58 65.5
Thecc.01G229400 Theobroma cacao HOM05D001336 ORTHO05D001211 1.7e-10 69.7 57 61.4
Gohir.D08G057100 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.2e-10 69.3 59 62.7
Thecc.05G202600 Theobroma cacao HOM05D001336 ORTHO05D001211 2.2e-10 69.3 56 62.5
Eucgr.H00810 Eucalyptus grandis HOM05D001336 ORTHO05D001211 2.8e-10 68.9 58 58.6
RcHm_v2.0_Chr3g0448421 Rosa chinensis HOM05D001336 ORTHO05D001211 2.8e-10 68.9 66 54.5
arahy.Tifrunner.gnm1.ann1.AE82WW Arachis hypogaea HOM05D001336 ORTHO05D001211 3.7e-10 68.6 58 62.1
ClCG07G001750 Citrullus lanatus HOM05D001336 ORTHO05D001211 3.7e-10 68.6 58 62.1
FvH4_2g19510 Fragaria vesca HOM05D001336 ORTHO05D001211 3.7e-10 68.6 58 60.3
FAN15G1782 Fragaria x ananassa HOM05D001336 ORTHO05D001211 3.7e-10 68.6 58 60.3
FAN24G0398 Fragaria x ananassa HOM05D001336 ORTHO05D001211 3.7e-10 68.6 58 60.3
Gorai.004G058300 Gossypium raimondii HOM05D001336 ORTHO05D001211 3.7e-10 68.6 59 61.0
VMungo1383G2718 Vigna mungo HOM05D001336 ORTHO05D001211 3.7e-10 68.6 68 57.4
Atru.chr12.2157 Acer truncatum HOM05D001336 ORTHO05D001211 4.8e-10 68.2 56 64.3
Cc01_g17300 Coffea canephora HOM05D001336 ORTHO05D001211 4.8e-10 68.2 59 61.0
Migut.D00517 Erythranthe guttata HOM05D001336 ORTHO05D001211 4.8e-10 68.2 60 60.0
Medtr7g079430 Medicago truncatula HOM05D001336 ORTHO05D001211 4.8e-10 68.2 69 53.6
Oeu018506.1 Olea europaea HOM05D001336 ORTHO05D001211 4.8e-10 68.2 58 58.6
Sabra14G0136600 Salix brachista HOM05D001336 ORTHO05D001211 4.8e-10 68.2 58 58.6
Sabra14G0138500 Salix brachista HOM05D001336 ORTHO05D001211 4.8e-10 68.2 58 58.6
Duzib133G0327 Durio zibethinus HOM05D001336 ORTHO05D001211 6.3e-10 67.8 59 55.9
Glyma.18G149700 Glycine max HOM05D001336 ORTHO05D001211 6.3e-10 67.8 58 56.9
Psat3g105000 Pisum sativum HOM05D001336 ORTHO05D001211 6.3e-10 67.8 59 59.3
TWI75G1288 Tripterygium wilfordii HOM05D001336 ORTHO05D001211 6.3e-10 67.8 57 61.4
Gohir.A08G046600 Gossypium hirsutum HOM05D001336 ORTHO05D001211 8.2e-10 67.4 59 61.0
Phvul.008G056500 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 8.2e-10 67.4 66 56.1
SGA_v2.0_scaffold122G33231 Striga asiatica HOM05D001336 ORTHO05D001211 8.2e-10 67.4 56 51.8
TAR362G0871 Trochodendron aralioides HOM05D001336 ORTHO05D001211 8.2e-10 67.4 62 58.1
TAR362G0935 Trochodendron aralioides HOM05D001336 ORTHO05D001211 8.2e-10 67.4 62 58.1
EL10Ac7g17798 Beta vulgaris HOM05D001336 ORTHO05D001211 1.1e-09 67.0 83 45.8
CANSAT54G0489 Cannabis sativa HOM05D001336 ORTHO05D001211 1.1e-09 67.0 65 52.3
CiPaw.03G151900 Carya illinoinensis HOM05D001336 ORTHO05D001211 1.1e-09 67.0 58 60.3
Ca_07957_v3 Cicer arietinum L. HOM05D001336 ORTHO05D001211 1.1e-09 67.0 66 53.0
Nitab4.5_0001056g0050 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.4e-09 66.6 58 60.3
Nitab4.5_0001740g0020 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.4e-09 66.6 58 62.1
Nitab4.5_0009814g0030 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.4e-09 66.6 65 55.4
Peaxi162Scf00215g00412 Petunia axillaris HOM05D001336 ORTHO05D001211 1.4e-09 66.6 67 55.2
MSTRG.18378 Avicennia marina HOM05D001336 ORTHO05D001211 1.8e-09 66.2 59 59.3
CSS0032998 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.8e-09 66.2 56 62.5
Lj3g0009715 Lotus japonicus HOM05D001336 ORTHO05D001211 1.8e-09 66.2 58 58.6
Nitab4.5_0000456g0010 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.8e-09 66.2 65 58.5
Nitab4.5_0003180g0020 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.8e-09 66.2 58 60.3
THA.LOC104818941 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 1.8e-09 66.2 58 58.6
GSVIVG01028556001 Vitis vinifera HOM05D001336 ORTHO05D001211 1.8e-09 66.2 58 56.9
AUR62008882 Chenopodium quinoa HOM05D001336 ORTHO05D001211 2.4e-09 65.9 58 58.6
AUR62031826 Chenopodium quinoa HOM05D001336 ORTHO05D001211 2.4e-09 65.9 58 58.6
Duzib177G0885 Durio zibethinus HOM05D001336 ORTHO05D001211 2.4e-09 65.9 56 58.9
HanXRQChr10g0279941 Helianthus annuus HOM05D001336 ORTHO05D001211 2.4e-09 65.9 58 58.6
CSS0027405 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 3.1e-09 65.5 61 52.5
CANSAT01G3031 Cannabis sativa HOM05D001336 ORTHO05D001211 3.1e-09 65.5 58 58.6
CiPaw.04G107200 Carya illinoinensis HOM05D001336 ORTHO05D001211 3.1e-09 65.5 58 58.6
Ca_20014_v3 Cicer arietinum L. HOM05D001336 ORTHO05D001211 3.1e-09 65.5 58 56.9
Hund05526 Selenicereus undatus HOM05D001336 ORTHO05D001211 3.1e-09 65.5 58 56.9
CAN.G4.32 Capsicum annuum HOM05D001336 ORTHO05D001211 4.1e-09 65.1 67 53.7
QL09p044535 Quercus lobata HOM05D001336 ORTHO05D001211 4.1e-09 65.1 58 56.9
RcHm_v2.0_Chr6g0285231 Rosa chinensis HOM05D001336 ORTHO05D001211 4.1e-09 65.1 58 58.6
TPR.G5259 Trifolium pratense HOM05D001336 ORTHO05D001211 4.1e-09 65.1 65 53.8
CSS0036758 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 5.3e-09 64.7 61 52.5
Ciclev10020154m.g Citrus clementina HOM05D001336 ORTHO05D001211 5.3e-09 64.7 62 58.1
Eucgr.B01630 Eucalyptus grandis HOM05D001336 ORTHO05D001211 5.3e-09 64.7 69 50.7
THA.LOC104802681 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 5.3e-09 64.7 58 55.2
TWI31G1246 Tripterygium wilfordii HOM05D001336 ORTHO05D001211 5.3e-09 64.7 58 58.6
FAN27G1089 Fragaria x ananassa HOM05D001336 ORTHO05D001211 6.9e-09 64.3 58 58.6
Hma1.2p1_1061F.1_g253280 Hydrangea macrophylla HOM05D001336 ORTHO05D001211 6.9e-09 64.3 58 55.2
Prupe.8G206600 Prunus persica HOM05D001336 ORTHO05D001211 6.9e-09 64.3 58 56.9
CAN.G941.42 Capsicum annuum HOM05D001336 ORTHO05D001211 9.1e-09 63.9 58 58.6
Haze_24769 Corylus avellana HOM05D001336 ORTHO05D001211 1.2e-08 63.5 58 56.9
Duzib177G0051 Durio zibethinus HOM05D001336 ORTHO05D001211 1.2e-08 63.5 56 58.9
Glyma.03G083100 Glycine max HOM05D001336 ORTHO05D001211 1.2e-08 63.5 58 53.4
Oeu015460.1 Olea europaea HOM05D001336 ORTHO05D001211 1.2e-08 63.5 65 52.3
Sc16g0010220 Simmondsia chinensis HOM05D001336 ORTHO05D001211 1.5e-08 63.2 56 57.1
Sopen06g002820 Solanum pennellii HOM05D001336 ORTHO05D001211 1.5e-08 63.2 65 52.3
SGA_v2.0_scaffold1G00712 Striga asiatica HOM05D001336 ORTHO05D001211 1.5e-08 63.2 58 56.9
TPR.G5601 Trifolium pratense HOM05D001336 ORTHO05D001211 1.5e-08 63.2 58 55.2
Phvul.010G013800 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 2.0e-08 62.8 58 53.4
unitig_60.g25601 Utricularia gibba HOM05D001336 ORTHO05D001211 2.0e-08 62.8 58 53.4
HPP92_007062 Vanilla planifolia HOM05D001336 ORTHO05D001211 2.0e-08 62.8 61 54.1
Eucgr.H01372 Eucalyptus grandis HOM05D001336 ORTHO05D001211 2.6e-08 62.4 65 47.7
Lj2A1135G32 Lonicera japonica HOM05D001336 ORTHO05D001211 2.6e-08 62.4 58 55.2
Lalb_Chr07g0193961 Lupinus albus HOM05D001336 ORTHO05D001211 2.6e-08 62.4 58 56.9
MD05G1179300 Malus domestica HOM05D001336 ORTHO05D001211 2.6e-08 62.4 57 57.9
Cfa002542 Carpinus fangiana HOM05D001336 ORTHO05D001211 3.4e-08 62.0 58 56.9
Sed0022555 Sechium edule HOM05D001336 ORTHO05D001211 3.4e-08 62.0 58 53.4
Solyc04g051150.3 Solanum lycopersicum HOM05D001336 ORTHO05D001211 3.4e-08 62.0 67 52.2
Sopen04g022440 Solanum pennellii HOM05D001336 ORTHO05D001211 3.4e-08 62.0 67 52.2
COL.COLO4_04694 Corchorus olitorius HOM05D001336 ORTHO05D001211 4.5e-08 61.6 54 61.1
DCAR_005506 Daucus carota HOM05D001336 ORTHO05D001211 4.5e-08 61.6 57 56.1
Nn3g19896 Nelumbo nucifera HOM05D001336 ORTHO05D001211 4.5e-08 61.6 62 53.2
Oeu020386.4 Olea europaea HOM05D001336 ORTHO05D001211 4.5e-08 61.6 65 47.7
unitig_85.g27276 Utricularia gibba HOM05D001336 ORTHO05D001211 4.5e-08 61.6 58 55.2
Sc09g0001660 Simmondsia chinensis HOM05D001336 ORTHO05D001211 5.9e-08 61.2 68 50.0
EL10Ac4g09434 Beta vulgaris HOM05D001336 ORTHO05D001211 7.7e-08 60.8 63 50.8
AUR62000371 Chenopodium quinoa HOM05D001336 ORTHO05D001211 7.7e-08 60.8 63 52.4
AUR62006726 Chenopodium quinoa HOM05D001336 ORTHO05D001211 7.7e-08 60.8 63 52.4
Gorai.001G184700 Gossypium raimondii HOM05D001336 ORTHO05D001211 7.7e-08 60.8 58 58.6
Rhsim09G0130900 Rhododendron simsii HOM05D001336 ORTHO05D001211 7.7e-08 60.8 89 41.6
vmacro10398 Vaccinium macrocarpon HOM05D001336 ORTHO05D001211 7.7e-08 60.8 71 50.7
Gohir.D07G161450 Gossypium hirsutum HOM05D001336 ORTHO05D001211 1.0e-07 60.5 58 58.6
MD10G1168900 Malus domestica HOM05D001336 ORTHO05D001211 1.0e-07 60.5 58 55.2
Gohir.A07G155200 Gossypium hirsutum HOM05D001336 ORTHO05D001211 1.7e-07 59.7 58 56.9
PSO017G6092 Papaver somniferum HOM05D001336 ORTHO05D001211 1.7e-07 59.7 60 51.7
PSO063G6246 Papaver somniferum HOM05D001336 ORTHO05D001211 1.7e-07 59.7 60 51.7
MD12G1256800 Malus domestica HOM05D001336 ORTHO05D001211 2.2e-07 59.3 59 54.2
Eucgr.B01378 Eucalyptus grandis HOM05D001336 ORTHO05D001211 2.9e-07 58.9 68 47.1
Manes.09G183500 Manihot esculenta HOM05D001336 ORTHO05D001211 3.8e-07 58.5 57 49.1
PGSC0003DMG400015817 Solanum tuberosum HOM05D001336 ORTHO05D001211 3.8e-07 58.5 56 51.8
GSVIVG01019162001 Vitis vinifera HOM05D001336 ORTHO05D001211 3.8e-07 58.5 56 55.4
MD04G1239700 Malus domestica HOM05D001336 ORTHO05D001211 5.0e-07 58.2 65 49.2
BcaC05g29832 Brassica carinata HOM05D001336 ORTHO05D001211 6.5e-07 57.8 58 51.7
A05p41170 Brassica napus HOM05D001336 ORTHO05D001211 6.5e-07 57.8 58 51.7
C05p60380 Brassica napus HOM05D001336 ORTHO05D001211 6.5e-07 57.8 58 51.7
BolC5t34684H Brassica oleracea HOM05D001336 ORTHO05D001211 6.5e-07 57.8 58 51.7
AT3G07020 Arabidopsis thaliana HOM05D001336 ORTHO05D001211 8.5e-07 57.4 59 54.2
HanXRQChr05g0156921 Helianthus annuus HOM05D001336 ORTHO05D001211 8.5e-07 57.4 58 51.7
Nn1g03136 Nelumbo nucifera HOM05D001336 ORTHO05D001211 8.5e-07 57.4 62 48.4
SalBow4G2375 Salvia bowleyana HOM05D001336 ORTHO05D001211 8.5e-07 57.4 58 51.7
A03p35010 Brassica napus HOM05D001336 ORTHO05D001211 1.1e-06 57.0 59 52.5
C03p42590 Brassica napus HOM05D001336 ORTHO05D001211 1.1e-06 57.0 59 52.5
BolC3t16529H Brassica oleracea HOM05D001336 ORTHO05D001211 1.1e-06 57.0 59 52.5
BraA03t12681Z Brassica rapa HOM05D001336 ORTHO05D001211 1.1e-06 57.0 59 52.5
ClCG09G009190 Citrullus lanatus HOM05D001336 ORTHO05D001211 1.1e-06 57.0 58 51.7
Manes.08G105200 Manihot esculenta HOM05D001336 ORTHO05D001211 1.1e-06 57.0 57 52.6
Sp3g05960 Schrenkiella parvula HOM05D001336 ORTHO05D001211 1.1e-06 57.0 68 45.6
CARHR081610 Cardamine hirsuta HOM05D001336 ORTHO05D001211 1.4e-06 56.6 59 52.5
ECA233G1228 Erigeron canadensis HOM05D001336 ORTHO05D001211 1.4e-06 56.6 58 48.3
HanXRQChr01g0014721 Helianthus annuus HOM05D001336 ORTHO05D001211 1.4e-06 56.6 83 43.4
Lalb_Chr12g0209611 Lupinus albus HOM05D001336 ORTHO05D001211 1.4e-06 56.6 60 53.3
PSO832G3285 Papaver somniferum HOM05D001336 ORTHO05D001211 1.4e-06 56.6 61 47.5
Potri.002G238600 Populus trichocarpa HOM05D001336 ORTHO05D001211 1.4e-06 56.6 58 48.3
SalBow3G4149 Salvia bowleyana HOM05D001336 ORTHO05D001211 1.4e-06 56.6 66 50.0
Aqoxy2G03793 Aquilegia oxysepala HOM05D001336 ORTHO05D001211 2.5e-06 55.8 61 47.5
Hund21872 Selenicereus undatus HOM05D001336 ORTHO05D001211 2.5e-06 55.8 68 50.0
BcaC05g29760 Brassica carinata HOM05D001336 ORTHO05D001211 3.2e-06 55.5 58 51.7
Migut.N02257 Erythranthe guttata HOM05D001336 ORTHO05D001211 4.2e-06 55.1 56 55.4
MBI10_g43788_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 4.2e-06 55.1 61 49.2
TAR636G0361 Trochodendron aralioides HOM05D001336 ORTHO05D001211 5.5e-06 54.7 41 65.9
Potri.014G178300 Populus trichocarpa HOM05D001336 ORTHO05D001211 7.2e-06 54.3 59 49.2
arahy.Tifrunner.gnm1.ann1.KG7SDJ Arachis hypogaea HOM05D001336 ORTHO05D001211 9.4e-06 53.9 42 64.3
CDE05G3579 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 9.4e-06 53.9 62 48.4
Thhalv10020288m.g Eutrema salsugineum HOM05D001336 ORTHO05D001211 9.4e-06 53.9 59 50.8
SEGI_02555 Sequoiadendron giganteum HOM05D001336 ORTHO05D001211 9.4e-06 53.9 61 50.8


User provided reference genes

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