Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 6.7e-34 146.7 72 100.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 8.2e-24 113.2 71 77.5
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.0e-22 108.6 71 73.2
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 4.5e-22 107.5 72 73.6
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 7.6e-22 106.7 71 70.4
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-21 105.9 69 71.0
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 1.3e-21 105.9 69 71.0
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.2e-21 105.1 69 71.0
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 2.9e-21 104.8 73 75.3
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.8e-21 104.4 71 67.6
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.8e-21 104.4 68 72.1
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 8.4e-21 103.2 69 72.5
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.4e-20 102.4 69 71.0
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.4e-20 102.4 71 63.4
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.4e-20 102.4 71 64.8
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.4e-20 102.4 67 73.1
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 1.9e-20 102.1 72 69.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.9e-20 102.1 70 70.0
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.9e-20 102.1 71 66.2
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.5e-20 101.7 71 63.4
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 3.2e-20 101.3 73 72.6
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 3.2e-20 101.3 70 64.3
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.2e-20 100.9 71 63.4
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 4.2e-20 100.9 68 69.1
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 5.5e-20 100.5 70 67.1
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 5.5e-20 100.5 72 65.3
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 7.1e-20 100.1 71 67.6
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 7.1e-20 100.1 69 71.0
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 7.1e-20 100.1 69 71.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 9.3e-20 99.8 71 67.6
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.6e-19 99.0 70 65.7
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 2.1e-19 98.6 71 64.8
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.7e-19 98.2 71 71.8
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.7e-19 98.2 74 70.3
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 6.1e-19 97.1 71 64.8
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 6.1e-19 97.1 71 63.4
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 6.1e-19 97.1 70 61.4
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 7.9e-19 96.7 69 66.7
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.0e-18 96.3 72 66.7
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 1.8e-18 95.5 71 62.0
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.8e-18 95.5 69 65.2
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 3.0e-18 94.7 68 64.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 3.0e-18 94.7 67 68.7
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 3.9e-18 94.4 72 62.5
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.9e-18 94.4 71 64.8
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.9e-18 94.4 69 65.2
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 8.7e-18 93.2 72 63.9
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.1e-17 92.8 70 62.9
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.3e-17 90.9 66 66.7
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 5.7e-17 90.5 72 59.7
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 7.4e-17 90.1 72 58.3
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 9.7e-17 89.7 72 62.5
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.6e-16 89.0 72 65.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.2e-16 88.6 71 60.6
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.2e-16 88.6 67 62.7
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.2e-16 88.6 67 62.7
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 3.7e-16 87.8 70 62.9
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 4.8e-16 87.4 72 59.7
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.4e-15 85.9 67 59.7
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.4e-15 85.9 68 63.2
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.8e-15 85.5 70 55.7
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 3.1e-15 84.7 72 56.9
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 4.1e-15 84.3 71 53.5
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 4.1e-15 84.3 72 55.6
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 4.1e-15 84.3 71 54.9
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 6.9e-15 83.6 70 57.1
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 9.0e-15 83.2 68 63.2
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 9.0e-15 83.2 75 50.7
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.5e-14 82.4 75 50.7
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.6e-14 81.6 70 51.4
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.6e-14 81.6 72 52.8
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 2.6e-14 81.6 70 55.7
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.3e-13 79.3 73 58.9
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 2.2e-13 78.6 74 50.0
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 2.2e-13 78.6 74 50.0
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 2.2e-13 78.6 74 50.0
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 2.2e-13 78.6 74 50.0
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.2e-13 78.6 74 50.0
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 5.0e-13 77.4 65 56.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 6.5e-13 77.0 73 49.3
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.1e-12 76.3 72 52.8
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.1e-12 76.3 72 51.4
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.4e-12 75.9 68 52.9
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.9e-12 75.5 74 48.6
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.9e-12 75.5 72 56.9
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 3.2e-12 74.7 72 52.8
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 3.2e-12 74.7 70 51.4
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 9.4e-12 73.2 73 47.9
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.2e-11 72.8 72 48.6
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.1e-11 72.0 72 55.6
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.6e-11 71.2 74 43.2
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 4.6e-11 70.9 74 44.6
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.6e-11 70.9 74 44.6
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-10 69.7 73 45.2
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.0e-10 69.7 73 45.2
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.4e-10 69.3 73 47.9
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 1.8e-10 68.9 64 50.0
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 2.3e-10 68.6 73 43.8
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 3.0e-10 68.2 50 68.0
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 6.7e-10 67.0 72 51.4
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 8.8e-10 66.6 69 46.4
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.1e-09 66.2 72 43.1
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.5e-09 65.1 43 65.1
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 4.3e-09 64.3 71 45.1
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 9.7e-09 63.2 72 40.3
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 4.1e-07 57.8 48 54.2


User provided reference genes

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