Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 3.7e-29 131.3 91 100.0
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 2.2e-26 122.1 92 73.9
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 2.2e-26 122.1 91 76.9
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 8.4e-26 120.2 92 72.8
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 5.5e-25 117.5 91 71.4
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 4.6e-24 114.4 92 72.8
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 6.0e-24 114.0 90 70.0
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 7.9e-24 113.6 95 70.5
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 1.0e-23 113.2 91 67.0
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 1.1e-22 109.8 93 82.8
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.1e-22 109.8 90 70.0
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 1.1e-22 109.8 90 68.9
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.5e-22 109.4 92 68.5
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 2.5e-22 108.6 93 87.1
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 2.5e-22 108.6 93 87.1
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 9.7e-22 106.7 91 63.7
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 2.8e-21 105.1 93 75.3
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 2.8e-21 105.1 91 73.6
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 6.3e-21 104.0 90 66.7
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 6.3e-21 104.0 91 64.8
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.1e-20 103.2 91 63.7
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 3.1e-20 101.7 90 62.2
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 4.1e-20 101.3 90 62.2
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 5.3e-20 100.9 90 64.4
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 6.9e-20 100.5 96 66.7
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 1.5e-19 99.4 92 65.2
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 2.0e-19 99.0 90 61.1
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 2.6e-19 98.6 95 64.2
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 3.4e-19 98.2 92 67.4
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 3.4e-19 98.2 92 67.4
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 1.0e-18 96.7 91 60.4
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.0e-18 96.7 95 63.2
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 1.0e-18 96.7 94 58.5
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 2.9e-18 95.1 93 63.4
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 3.8e-18 94.7 95 62.1
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 5.0e-18 94.4 96 58.3
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 8.5e-18 93.6 96 62.5
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 8.5e-18 93.6 96 62.5
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 1.9e-17 92.4 95 58.9
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 1.9e-17 92.4 90 61.1
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 2.5e-17 92.0 91 61.5
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 4.2e-17 91.3 65 78.5
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 5.5e-17 90.9 61 78.7
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 7.2e-17 90.5 86 59.3
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 1.2e-16 89.7 93 78.5
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 1.6e-16 89.4 95 58.9
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 2.7e-16 88.6 62 77.4
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.7e-16 88.6 60 78.3
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.7e-16 88.6 61 75.4
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 2.7e-16 88.6 90 57.8
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 4.6e-16 87.8 94 63.8
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 7.9e-16 87.0 87 59.8
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 1.0e-15 86.7 95 57.9
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 1.4e-15 86.3 62 74.2
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 1.4e-15 86.3 95 71.6
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.4e-15 86.3 95 71.6
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.3e-15 85.5 63 69.8
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.3e-15 85.5 63 69.8
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.3e-15 85.5 63 69.8
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 3.9e-15 84.7 95 70.5
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.9e-15 84.7 91 54.9
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 5.1e-15 84.3 91 79.1
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.1e-14 83.2 91 53.8
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.1e-14 83.2 91 53.8
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 1.5e-14 82.8 84 54.8
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 1.9e-14 82.4 100 56.0
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.5e-14 82.0 95 68.4
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 2.5e-14 82.0 93 73.1
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 2.5e-14 82.0 93 77.4
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 3.3e-14 81.6 93 76.3
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 5.7e-14 80.9 100 67.0
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 7.4e-14 80.5 95 68.4
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 7.4e-14 80.5 65 69.2
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 7.4e-14 80.5 93 51.6
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 1.3e-13 79.7 89 80.9
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.7e-13 79.3 95 52.6
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 2.2e-13 79.0 90 54.4
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 2.8e-13 78.6 95 70.5
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 1.8e-12 75.9 96 63.5
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 6.9e-12 73.9 110 48.2
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 9.1e-12 73.6 95 71.6
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.2e-11 73.2 62 61.3
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.2e-11 73.2 62 61.3
GSVIVG01024785001 Vitis vinifera HOM05D005811 ORTHO05D007070 1.2e-11 73.2 90 73.3
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.5e-11 72.8 76 55.3
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 7.7e-11 70.5 55 69.1
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 1.0e-10 70.1 100 46.0
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 1.0e-10 70.1 62 58.1
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 1.0e-10 70.1 62 58.1
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 1.0e-10 70.1 104 64.4
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.3e-10 69.7 76 53.9
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 1.7e-10 69.3 104 47.1
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 2.9e-10 68.6 62 56.5
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 2.9e-10 68.6 62 56.5
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 5.0e-10 67.8 62 56.5
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 6.5e-10 67.4 62 59.7
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 6.5e-10 67.4 62 59.7
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 6.5e-10 67.4 62 59.7
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 6.5e-10 67.4 62 59.7
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 8.5e-10 67.0 98 50.0
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 1.4e-09 66.2 62 51.6
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 1.4e-09 66.2 63 61.9
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 1.4e-09 66.2 63 61.9
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 1.4e-09 66.2 98 43.9
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.9e-09 65.9 77 50.6
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 2.5e-09 65.5 62 53.2
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 3.2e-09 65.1 103 41.7
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 4.2e-09 64.7 60 56.7
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 4.2e-09 64.7 100 45.0
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 5.5e-09 64.3 101 42.6
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 7.2e-09 63.9 62 53.2
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 9.4e-09 63.5 60 58.3
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 9.4e-09 63.5 99 42.4
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 1.2e-08 63.2 61 55.7
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 1.2e-08 63.2 100 44.0
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 1.2e-08 63.2 79 63.3
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 2.1e-08 62.4 99 44.4
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 4.7e-08 61.2 99 41.4
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 4.7e-08 61.2 99 63.6
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 7.9e-08 60.5 57 54.4
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 1.4e-07 59.7 65 56.9
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 1.1e-06 56.6 64 50.0
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 1.5e-06 56.2 102 50.0
CAN.G780.4 Capsicum annuum HOM05D005811 ORTHO05D007070 2.0e-06 55.8 66 71.2
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 5.7e-06 54.3 58 50.0


User provided reference genes

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