Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.5e-75 286.6 200 100.0
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.2e-62 242.3 201 78.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 3.1e-41 172.6 198 59.1
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 9.2e-41 171.0 200 56.0
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 5.6e-38 161.8 161 57.1
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 4.7e-37 158.7 198 55.6
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 8.0e-37 157.9 161 56.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.0e-36 157.5 161 56.5
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.4e-36 157.1 154 55.8
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.8e-36 156.8 198 54.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.3e-36 156.4 161 55.3
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.0e-36 156.0 161 55.3
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 5.2e-36 155.2 161 59.0
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.8e-36 154.8 200 56.5
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 4.4e-35 152.1 156 55.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.7e-34 150.2 160 58.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.9e-34 149.4 161 56.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.9e-34 149.4 201 59.2
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 3.7e-34 149.1 197 56.9
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 3.7e-34 149.1 156 52.6
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.7e-34 149.1 203 47.8
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 4.9e-34 148.7 203 46.8
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 8.3e-34 147.9 161 54.0
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.4e-33 147.1 203 49.8
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.4e-33 146.4 201 52.7
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.2e-33 146.0 161 54.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 3.2e-33 146.0 161 53.4
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 4.1e-33 145.6 161 54.0
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 5.4e-33 145.2 188 50.0
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 7.0e-33 144.8 150 54.7
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 9.2e-33 144.4 161 54.7
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 9.2e-33 144.4 161 54.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 9.2e-33 144.4 161 54.7
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 9.2e-33 144.4 156 57.1
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.2e-32 144.1 161 52.8
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.6e-32 143.7 201 58.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.6e-32 143.7 161 52.8
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.6e-32 143.7 188 49.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.6e-32 142.1 161 52.2
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 6.0e-32 141.7 156 51.3
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 6.0e-32 141.7 161 50.9
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 7.8e-32 141.4 161 51.6
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 7.8e-32 141.4 161 52.8
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.8e-32 141.4 161 53.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.0e-31 141.0 156 59.0
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-31 140.2 158 57.6
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.7e-31 140.2 161 50.9
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 3.0e-31 139.4 156 58.3
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.9e-31 139.0 159 56.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.9e-31 139.0 159 56.6
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 5.0e-31 138.7 161 55.3
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.0e-31 138.7 159 56.6
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.6e-31 138.3 159 48.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.1e-30 137.5 160 51.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.5e-30 137.1 158 57.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.3e-30 136.0 161 59.6
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.3e-30 135.6 158 48.1
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 5.6e-30 135.2 161 50.3
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 7.3e-30 134.8 161 50.9
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 9.5e-30 134.4 151 53.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 9.5e-30 134.4 161 59.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 4.7e-29 132.1 200 44.5
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 4.7e-29 132.1 200 44.5
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.1e-28 131.0 161 46.6
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.1e-28 131.0 156 59.6
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.3e-28 129.8 161 46.0
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.1e-28 129.4 161 54.0
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 4.0e-28 129.0 196 52.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 5.2e-28 128.6 161 53.4
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 6.8e-28 128.3 160 56.2
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 2.0e-27 126.7 161 57.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 3.4e-27 125.9 203 47.3
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.4e-27 125.9 203 50.2
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.4e-27 125.9 203 50.2
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.8e-27 125.2 217 40.6
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 7.5e-27 124.8 200 42.5
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-26 123.6 161 52.2
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-26 122.1 156 59.0
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-26 122.1 156 59.0
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 6.4e-26 121.7 201 45.8
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.4e-25 120.6 161 44.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.4e-25 120.6 158 47.5
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 4.1e-25 119.0 160 56.2
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 5.4e-25 118.6 200 44.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 5.4e-25 118.6 152 47.4
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.6e-24 117.1 198 50.5
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.0e-24 116.7 156 56.4
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 2.0e-24 116.7 200 44.0
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.0e-23 114.4 229 41.0
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.0e-23 114.4 204 54.9
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.0e-23 114.4 154 57.1
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.7e-23 113.6 197 54.8
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.3e-23 113.2 106 62.3
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 3.9e-23 112.5 224 40.2
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.6e-23 111.3 161 50.3
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 7.3e-22 108.2 160 47.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.3e-22 108.2 161 50.9
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 9.5e-22 107.8 158 43.0
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 3.6e-21 105.9 199 52.3
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 4.7e-21 105.5 199 51.3
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.2e-21 105.1 200 47.5
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.8e-20 103.6 158 50.6
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 5.2e-20 102.1 155 43.9
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 8.9e-20 101.3 155 54.2
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.6e-19 99.8 158 44.3
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.2e-18 96.7 161 44.1
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 4.9e-18 95.5 197 47.7
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 4.9e-18 95.5 204 51.0
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.4e-17 94.0 159 55.3
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.4e-17 93.2 124 54.8
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 4.1e-17 92.4 101 53.5
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 5.4e-17 92.0 198 44.9
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 7.1e-17 91.7 101 71.3
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 7.1e-17 91.7 189 40.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.2e-16 90.9 150 41.3
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.7e-16 89.7 156 38.5
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.0e-15 87.8 161 40.4
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.0e-15 86.3 155 47.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 5.1e-15 85.5 203 34.0
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.5e-14 84.0 154 37.7
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.9e-14 83.6 101 59.4
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 9.5e-14 81.3 158 51.9
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.2e-13 80.9 106 45.3
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.6e-13 80.5 106 49.1
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 2.8e-13 79.7 119 60.5
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 6.2e-13 78.6 101 67.3
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.4e-12 77.4 71 64.8
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 2.0e-11 73.6 123 52.0
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.2e-10 70.1 68 55.9
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 2.9e-10 69.7 183 39.3
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.9e-10 69.7 183 39.3
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 8.4e-10 68.2 200 40.0
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.4e-09 67.4 83 47.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 7.8e-08 61.6 161 43.5
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.0e-07 61.2 147 36.7
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.3e-07 60.8 160 35.6
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 2.3e-07 60.1 143 44.1
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 3.3e-06 56.2 82 48.8
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.3e-06 55.1 65 44.6


User provided reference genes

Program Settings