Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 3.1e-164 581.6 278 100.0
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 3.2e-116 422.2 278 73.4
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 7.8e-115 417.5 277 72.6
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 9.2e-108 394.0 265 68.3
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 6.0e-107 391.3 276 65.9
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 2.3e-106 389.4 277 66.8
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 5.1e-106 388.3 262 69.1
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 1.1e-105 387.1 270 66.7
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 1.9e-105 386.3 262 67.6
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 4.3e-105 385.2 266 68.4
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 2.1e-104 382.9 273 65.6
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 4.7e-104 381.7 258 67.8
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 4.7e-104 381.7 258 67.8
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 6.2e-104 381.3 280 65.4
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 1.4e-103 380.2 262 66.0
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 3.1e-103 379.0 258 67.1
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 3.1e-103 379.0 256 68.8
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.0e-103 378.6 277 65.3
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 6.9e-103 377.9 277 63.9
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 3.4e-102 375.6 276 63.8
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 4.4e-102 375.2 248 68.5
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 1.7e-101 373.2 252 67.5
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.2e-101 372.9 277 64.3
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 6.4e-101 371.3 262 63.7
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 6.4e-101 371.3 262 63.7
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.4e-100 370.2 262 63.7
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.9e-100 369.8 284 61.3
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 4.2e-100 368.6 262 63.7
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 4.2e-100 368.6 254 66.1
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 5.4e-100 368.2 265 64.2
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.1e-99 366.3 245 69.0
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.5e-99 365.5 275 62.2
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 7.8e-99 364.4 255 65.1
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 3.0e-98 362.5 277 61.7
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 5.1e-98 361.7 250 66.0
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 9.6e-97 357.5 262 61.8
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.6e-96 356.7 344 53.8
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 9.0e-95 350.9 264 63.6
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.5e-94 350.1 250 64.8
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 4.5e-94 348.6 256 63.3
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 6.0e-91 338.2 280 58.6
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 3.7e-88 328.9 281 62.3
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 6.2e-88 328.2 225 66.7
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 5.8e-86 321.6 258 61.6
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 9.9e-86 320.9 258 57.8
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 8.7e-82 307.8 208 69.7
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 7.4e-81 304.7 254 55.1
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 3.7e-80 302.4 255 57.6
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 6.2e-80 301.6 249 55.4
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 2.4e-79 299.7 254 56.7
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 1.5e-78 297.0 209 66.0
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 1.1e-76 290.8 265 54.3
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.7e-75 286.2 247 57.1
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 6.7e-74 281.6 207 65.2
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 4.1e-71 272.3 251 53.8
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 6.5e-69 265.0 212 60.8
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 1.1e-68 264.2 182 64.3
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 3.9e-66 255.8 195 61.5
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 2.5e-65 253.1 249 51.4
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 1.8e-63 246.9 160 70.6
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 5.9e-62 241.9 268 44.0
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.0e-58 229.6 266 42.5
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 3.9e-58 229.2 168 60.1
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.0e-57 226.9 271 44.3
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.3e-57 226.1 281 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 5.7e-57 225.3 246 45.1
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 5.7e-57 225.3 276 40.9
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.1e-55 221.1 251 43.0
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 1.1e-55 221.1 161 65.2
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.4e-55 220.7 247 44.1
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 5.5e-52 208.8 218 52.3
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 1.6e-46 190.7 265 35.5
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 2.9e-45 186.4 146 61.0
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 5.5e-44 182.2 258 32.9
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 7.2e-44 181.8 128 59.4
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 1.2e-43 181.0 258 33.3
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 1.2e-43 181.0 258 33.3
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 1.1e-36 157.9 109 68.8
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 2.8e-32 143.3 88 71.6
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 2.4e-31 140.2 93 68.8
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 3.8e-29 132.9 87 67.8
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.3e-28 129.8 88 69.3
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.3e-28 129.8 88 69.3
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 8.3e-24 115.2 74 64.9
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 5.9e-22 109.0 87 56.3
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 6.6e-21 105.5 133 43.6
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.4e-17 92.8 56 75.0
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.8e-10 70.9 43 76.7


User provided reference genes

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