Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 5.0e-232 807.4 395 100.0
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.2e-177 626.7 347 87.3
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 3.2e-162 575.5 391 73.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.6e-161 573.2 377 77.2
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 4.6e-161 571.6 374 75.1
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 7.8e-161 570.9 378 75.9
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.6e-160 567.8 390 73.8
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.3e-158 563.5 372 76.3
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.8e-158 562.4 363 78.0
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.8e-155 552.0 390 70.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.7e-153 545.8 361 74.8
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 7.9e-153 544.3 383 70.0
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.8e-152 543.1 375 72.0
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.5e-151 540.0 391 69.8
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.4e-151 537.7 391 69.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.4e-149 532.7 367 72.8
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 5.3e-149 531.6 380 70.0
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.5e-148 530.0 386 68.9
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.3e-147 526.9 369 72.4
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.8e-147 525.4 367 72.5
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.9e-147 525.0 401 67.3
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 8.4e-147 524.2 390 67.4
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.5e-146 521.5 345 75.7
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.2e-145 520.4 388 67.8
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.6e-145 520.0 367 70.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.6e-145 518.5 369 69.9
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 4.6e-145 518.5 369 70.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.0e-145 518.1 368 69.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 7.9e-145 517.7 369 68.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.3e-144 516.2 389 69.4
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.0e-144 515.8 389 69.9
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 8.7e-144 514.2 388 69.1
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 8.7e-144 514.2 388 69.1
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.5e-143 513.5 382 67.5
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.5e-143 513.5 377 69.2
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.3e-143 511.9 387 68.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 9.6e-143 510.8 382 67.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 9.6e-143 510.8 369 68.8
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 9.6e-143 510.8 448 60.5
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.3e-142 510.4 390 69.5
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.6e-142 510.0 361 69.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 2.1e-142 509.6 390 66.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 6.2e-142 508.1 363 70.0
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.2e-142 508.1 378 70.6
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.2e-142 507.7 362 69.9
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.8e-141 506.5 375 67.7
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.4e-141 506.1 380 70.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.4e-141 506.1 376 67.6
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 5.3e-141 505.0 358 69.8
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.3e-141 505.0 372 67.7
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 3.4e-140 502.3 353 70.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 3.4e-140 502.3 378 66.9
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 4.5e-140 501.9 358 69.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 2.9e-139 499.2 352 70.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 3.8e-139 498.8 376 67.8
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 8.4e-139 497.7 359 69.4
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 8.4e-139 497.7 359 68.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 8.4e-139 497.7 367 69.2
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 1.1e-138 497.3 371 66.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.4e-138 496.9 371 66.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.9e-138 496.5 362 71.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.5e-138 496.1 358 69.8
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 2.5e-138 496.1 373 68.1
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 2.5e-138 496.1 359 69.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.5e-138 496.1 375 66.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 3.2e-138 495.7 359 68.8
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 4.2e-138 495.4 348 71.8
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 7.1e-138 494.6 359 68.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 7.1e-138 494.6 359 68.8
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.2e-137 493.8 359 68.8
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.2e-137 493.8 357 69.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 6.0e-137 491.5 386 65.8
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.0e-136 490.7 347 69.2
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.3e-136 490.3 376 65.7
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.3e-136 489.6 387 64.9
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 3.9e-136 488.8 392 65.8
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.9e-136 488.8 385 64.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.7e-136 488.0 387 65.4
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 6.7e-136 488.0 351 68.7
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 8.7e-136 487.6 380 65.8
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.5e-135 486.9 361 67.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 3.3e-135 485.7 369 66.7
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.7e-135 484.2 403 62.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 6.3e-134 481.5 362 65.5
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-132 476.9 419 61.8
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.0e-131 474.2 406 62.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.9e-131 472.6 344 67.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.9e-131 472.6 365 63.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.1e-130 470.7 369 64.0
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.4e-130 470.3 430 58.4
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.2e-130 468.8 369 64.0
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 5.5e-130 468.4 375 63.7
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 5.5e-130 468.4 362 65.2
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 7.9e-129 464.5 362 63.0
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.0e-128 462.6 344 67.4
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.3e-127 459.1 352 62.5
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 9.7e-127 457.6 343 69.4
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.3e-126 457.2 392 58.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.7e-126 456.8 411 60.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.2e-126 456.4 395 61.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.7e-126 455.7 377 62.6
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 6.9e-125 451.4 310 72.3
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.0e-123 447.6 278 82.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.0e-123 445.3 346 65.0
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.5e-123 444.9 352 66.2
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.5e-122 443.0 313 72.2
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.6e-121 439.1 403 58.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.6e-119 433.0 406 57.4
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 4.4e-119 432.2 379 58.8
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-117 427.6 416 57.2
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.1e-117 427.6 379 59.4
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.4e-117 427.2 341 61.6
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.8e-117 426.8 358 63.1
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.1e-117 426.0 364 60.4
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.5e-115 418.3 366 60.9
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 4.2e-114 415.6 546 44.3
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.1e-113 413.3 369 59.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-111 407.5 524 46.9
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.1e-111 407.5 369 59.6
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.6e-111 406.4 336 61.6
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 8.2e-110 401.4 421 53.2
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.4e-109 400.6 344 59.9
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.3e-107 394.0 346 60.4
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.7e-107 393.7 274 75.2
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.3e-103 379.4 265 70.9
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-101 374.0 346 57.8
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.5e-100 369.4 273 64.8
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.5e-98 364.0 298 63.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.5e-98 362.1 392 50.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.4e-93 346.7 259 68.0
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.1e-90 337.8 240 70.0
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.1e-90 337.8 353 50.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 5.5e-90 335.5 351 53.8
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 4.4e-87 325.9 243 66.7
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 3.1e-85 319.7 364 45.9
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 5.0e-83 312.4 349 48.1
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.5e-79 300.8 212 72.6
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 5.0e-75 285.8 536 36.9
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.4e-72 277.7 289 52.6
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 4.0e-72 276.2 354 45.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.7e-68 263.5 355 46.2
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.3e-67 261.2 199 65.8
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.4e-55 219.5 291 40.9
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.7e-54 217.6 270 45.9
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 3.9e-51 206.5 195 49.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.8e-41 173.7 382 32.2
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.8e-38 163.3 174 52.3
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 8.4e-38 162.2 306 33.7
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.9e-37 161.0 136 59.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 5.1e-35 152.9 336 29.5
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.6e-28 129.8 117 53.0
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.5e-26 124.0 94 68.1
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 6.5e-22 109.4 81 66.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 5.1e-19 99.8 56 78.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.1e-16 90.5 63 68.3
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.2e-15 88.6 47 85.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.0e-11 73.9 43 76.7
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.3e-10 70.1 135 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.0e-07 61.2 35 68.6
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 1.3e-06 58.5 46 58.7


User provided reference genes

Program Settings