Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 1.2e-172 609.8 299 100.0
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.7e-139 499.6 306 81.0
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 3.5e-137 491.9 306 80.4
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 7.6e-132 474.2 288 78.1
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 2.7e-129 465.7 287 77.4
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 3.5e-129 465.3 291 75.9
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 6.0e-129 464.5 289 76.1
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 1.3e-128 463.4 287 76.7
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 5.1e-128 461.5 298 73.8
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 8.7e-128 460.7 289 75.8
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.2e-126 456.8 285 76.8
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 1.2e-126 456.8 299 73.2
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 1.6e-126 456.4 285 76.8
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 1.6e-126 456.4 299 73.6
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 2.1e-126 456.1 297 72.7
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 4.7e-126 454.9 285 76.5
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 4.7e-126 454.9 299 72.9
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 6.2e-126 454.5 285 76.8
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 8.1e-126 454.1 299 72.9
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 8.1e-126 454.1 294 73.8
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 1.5e-124 449.9 300 72.0
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 2.6e-124 449.1 291 74.9
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 4.4e-124 448.4 288 75.0
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.7e-123 446.4 300 71.7
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.7e-123 446.4 314 70.1
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 6.4e-123 444.5 290 72.8
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 1.9e-122 443.0 284 76.1
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 2.4e-122 442.6 286 73.4
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 7.1e-122 441.0 290 72.1
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 1.6e-121 439.9 299 71.9
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 2.1e-121 439.5 298 70.5
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 3.5e-121 438.7 288 71.9
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 4.6e-121 438.3 288 74.0
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 6.0e-121 438.0 287 73.9
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 1.0e-120 437.2 298 69.8
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 2.3e-120 436.0 288 73.6
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 5.1e-120 434.9 287 72.8
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 5.1e-120 434.9 291 72.5
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 5.1e-120 434.9 288 72.9
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 1.9e-119 433.0 298 69.1
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 2.5e-119 432.6 283 71.7
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 5.6e-119 431.4 287 70.7
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 2.8e-118 429.1 293 70.6
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 2.8e-118 429.1 288 72.6
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 2.8e-118 429.1 289 72.3
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 6.2e-118 427.9 310 68.7
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 1.1e-117 427.2 295 71.5
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 1.1e-117 427.2 293 70.3
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 1.4e-117 426.8 296 68.6
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 1.4e-117 426.8 287 73.2
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 1.4e-117 426.8 298 68.5
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 3.1e-117 425.6 288 70.8
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 9.0e-117 424.1 289 69.6
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 2.6e-116 422.5 286 70.3
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 5.8e-116 421.4 292 69.9
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.9e-115 419.1 288 70.1
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 2.9e-115 419.1 318 66.0
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 4.9e-115 418.3 286 70.3
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.4e-114 416.8 287 69.0
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.2e-113 413.7 298 66.4
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 1.2e-113 413.7 282 72.0
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 2.7e-113 412.5 288 71.5
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 2.3e-112 409.5 289 67.8
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 6.7e-112 407.9 348 60.6
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.1e-111 407.1 294 68.0
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.3e-110 403.7 302 65.9
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.2e-110 401.4 285 70.5
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 8.1e-110 401.0 284 66.9
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 1.8e-109 399.8 288 65.6
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 3.1e-109 399.1 290 66.2
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 7.6e-108 394.4 303 65.7
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 9.9e-108 394.0 294 66.0
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 4.9e-107 391.7 289 68.5
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 5.5e-106 388.3 288 64.6
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 5.5e-106 388.3 288 64.6
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 1.2e-105 387.1 288 64.2
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 1.2e-105 387.1 256 72.3
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 1.6e-105 386.7 288 63.9
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 2.7e-105 386.0 288 64.2
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 1.0e-104 384.0 297 63.3
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 1.1e-103 380.6 288 63.9
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 7.4e-103 377.9 290 61.7
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 3.7e-102 375.6 289 66.1
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.7e-102 375.6 299 62.2
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 1.2e-100 370.5 365 51.8
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 3.4e-100 369.0 288 61.1
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 9.3e-98 360.9 218 78.4
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 4.6e-97 358.6 290 61.7
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 6.0e-97 358.2 289 61.9
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 9.7e-95 350.9 230 71.7
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 3.7e-94 349.0 292 60.6
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 3.4e-92 342.4 459 47.7
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 7.2e-90 334.7 291 57.7
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 5.1e-88 328.6 210 73.8
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.1e-87 327.4 278 59.0
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.2e-84 317.4 293 57.0
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 4.5e-84 315.5 281 54.4
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 5.9e-84 315.1 278 55.4
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 5.0e-83 312.0 268 60.1
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 3.6e-81 305.8 285 53.3
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 3.9e-80 302.4 283 53.7
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.4e-72 277.3 298 50.3
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 2.2e-70 270.0 181 69.1
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.8e-70 268.9 298 50.0
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.0e-64 249.6 186 64.5
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 6.7e-64 248.4 340 41.2
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 3.4e-55 219.5 199 56.3
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 1.7e-54 217.2 159 63.5
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 3.5e-52 209.5 173 59.0
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.2e-36 157.9 143 58.7
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 8.6e-35 151.8 107 65.4
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 3.3e-34 149.8 119 61.3
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 4.7e-33 146.0 204 42.2
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 8.6e-27 125.2 435 24.1
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 3.7e-22 109.8 265 26.8
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 6.6e-19 99.0 71 69.0
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 3.6e-17 93.2 62 71.0
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 2.4e-16 90.5 68 60.3
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 7.3e-10 68.9 50 70.0


User provided reference genes

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