Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.5e-106 388.3 190 100.0
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 5.1e-65 251.5 182 75.3
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.6e-40 167.5 173 53.2
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.4e-38 162.9 194 44.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.0e-37 159.8 200 44.5
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.4e-37 159.1 191 43.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 4.5e-37 158.7 175 51.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.0e-36 157.5 199 43.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-36 156.0 199 42.7
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-36 156.0 199 42.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 8.4e-36 154.5 197 45.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.5e-35 152.9 205 43.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.5e-35 152.9 183 44.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.6e-34 150.2 200 41.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 3.5e-34 149.1 209 41.1
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 6.0e-34 148.3 208 40.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.0e-33 147.5 196 42.9
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.3e-33 147.1 212 40.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.8e-33 146.7 213 41.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.3e-33 146.4 193 41.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.3e-33 146.4 210 41.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.0e-33 146.0 213 39.4
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.9e-33 145.6 191 39.8
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.9e-33 145.6 194 43.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 5.1e-33 145.2 196 40.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.1e-33 145.2 190 39.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 6.7e-33 144.8 192 41.1
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.7e-33 144.8 181 46.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 8.7e-33 144.4 194 43.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-32 144.1 147 50.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.1e-32 144.1 205 40.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-32 144.1 196 41.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.5e-32 143.7 207 37.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.9e-32 143.3 185 41.6
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-32 143.3 162 45.7
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-32 143.3 203 40.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.5e-32 142.9 200 39.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.5e-32 142.9 208 41.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.5e-32 142.9 197 41.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.5e-32 142.9 200 41.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.3e-32 142.5 185 40.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.3e-32 142.5 202 41.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.3e-32 142.5 202 41.6
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.7e-32 141.7 205 40.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.7e-32 141.7 201 38.8
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.4e-32 141.4 201 40.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.6e-32 141.0 145 48.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.3e-31 140.6 130 51.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.3e-31 140.6 203 38.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.3e-31 140.6 147 48.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-31 140.6 217 40.1
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.6e-31 140.2 191 40.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.6e-31 140.2 201 39.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-31 139.8 137 49.6
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.7e-31 139.0 195 40.0
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.8e-31 138.7 194 37.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 6.3e-31 138.3 186 40.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.3e-31 138.3 207 41.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 8.2e-31 137.9 140 45.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 8.2e-31 137.9 197 41.6
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.2e-31 137.9 196 39.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.1e-30 137.5 197 41.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.4e-30 137.1 210 40.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-30 137.1 156 46.8
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.8e-30 136.7 202 39.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.8e-30 136.7 211 38.9
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.4e-30 136.3 210 39.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.4e-30 136.3 205 39.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.1e-30 136.0 142 49.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.1e-30 135.6 143 48.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 5.3e-30 135.2 217 36.4
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 5.3e-30 135.2 191 41.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.9e-30 134.8 157 43.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.9e-30 134.8 197 38.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.0e-30 134.4 130 49.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 9.0e-30 134.4 182 39.6
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 9.0e-30 134.4 148 45.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.2e-29 134.0 202 39.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-29 134.0 154 44.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.2e-29 134.0 146 43.8
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-29 133.7 192 41.1
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.0e-29 133.3 146 47.3
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.0e-29 133.3 197 39.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-29 132.9 188 40.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.6e-29 132.9 200 38.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.6e-29 132.9 200 38.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.6e-29 132.9 208 38.9
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.6e-29 132.9 119 49.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.4e-29 132.5 136 46.3
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 5.9e-29 131.7 186 40.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.9e-29 131.7 92 59.8
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 5.9e-29 131.7 137 48.9
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 5.9e-29 131.7 210 38.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 5.9e-29 131.7 172 40.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 7.6e-29 131.3 148 43.2
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-28 130.6 200 37.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.3e-28 130.6 145 45.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.3e-28 130.6 145 45.5
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.2e-28 129.8 90 60.0
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.2e-28 129.8 141 48.2
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 3.8e-28 129.0 198 39.4
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.0e-28 128.6 139 43.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.0e-28 128.6 115 52.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 5.0e-28 128.6 218 38.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 6.5e-28 128.3 192 38.5
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 6.5e-28 128.3 196 38.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.5e-27 126.3 198 37.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.2e-27 125.9 141 41.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 3.2e-27 125.9 197 37.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 7.2e-27 124.8 211 36.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 4.6e-26 122.1 190 38.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-26 122.1 206 36.9
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.1e-26 121.7 135 43.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.3e-25 120.6 150 40.7
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.8e-25 120.2 134 45.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.0e-25 119.4 165 41.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.9e-24 116.7 156 42.9
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.9e-24 116.7 144 46.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.3e-24 115.9 117 49.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 7.4e-24 114.8 135 40.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.6e-23 113.6 127 43.3
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.7e-23 112.5 144 44.4
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.3e-22 108.6 84 52.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 6.9e-22 108.2 81 51.9
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.5e-21 107.1 95 49.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.5e-21 107.1 186 34.9
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 5.9e-21 105.1 140 37.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 7.7e-21 104.8 151 36.4
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.7e-21 104.8 186 34.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.7e-20 103.6 150 39.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.9e-20 102.8 116 44.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.5e-20 101.7 196 33.7
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.5e-20 101.3 120 43.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.9e-19 100.1 142 37.3
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 7.2e-19 98.2 71 53.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 7.2e-19 98.2 92 45.7
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.2e-19 98.2 135 41.5
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.6e-18 97.1 78 48.7
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.9e-18 94.7 100 42.0
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-17 93.6 120 45.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.3e-17 93.2 123 42.3
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.1e-17 92.0 128 40.6
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.3e-16 89.4 97 47.4
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.3e-16 89.4 98 43.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 6.3e-15 85.1 118 44.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 8.2e-15 84.7 80 47.5
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-12 77.8 93 39.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.5e-11 73.2 121 38.0
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.2e-11 72.8 121 38.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 3.0e-09 66.2 94 41.5
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.4e-06 57.4 55 47.3


User provided reference genes

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