Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.6e-194 681.4 348 100.0
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 3.0e-156 555.4 366 79.5
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 4.8e-154 548.1 349 81.4
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.2e-151 539.3 357 79.6
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 4.2e-150 535.0 357 78.4
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.6e-141 506.5 341 76.5
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.1e-141 506.1 349 76.2
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.8e-140 503.1 302 82.8
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 8.8e-140 500.7 302 83.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.6e-139 499.2 353 73.7
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 2.6e-139 499.2 349 74.8
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 1.3e-138 496.9 349 75.4
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.3e-138 496.9 349 75.1
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.8e-137 493.0 344 75.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 9.1e-137 490.7 341 73.6
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.0e-136 489.6 299 83.6
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.0e-136 489.6 302 82.8
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 4.5e-136 488.4 303 82.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 5.9e-136 488.0 344 73.5
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.0e-135 487.3 297 82.8
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.0e-135 487.3 295 82.4
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.2e-135 486.1 295 82.4
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.1e-134 483.8 301 81.4
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.2e-134 481.9 343 73.8
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.5e-134 481.5 344 74.7
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.2e-133 480.3 343 73.2
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.6e-133 479.9 339 72.6
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.6e-133 479.9 341 72.4
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.6e-133 479.9 341 73.3
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.4e-132 476.9 296 83.1
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.8e-132 476.5 344 73.5
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.3e-132 476.1 302 79.8
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 4.0e-132 475.3 350 72.9
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 4.0e-132 475.3 302 79.8
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 5.2e-132 474.9 293 81.6
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 6.7e-132 474.6 344 72.1
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.1e-131 473.8 297 79.5
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 1.1e-131 473.8 297 79.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.1e-131 473.8 344 70.6
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.1e-131 473.8 302 78.8
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 2.6e-131 472.6 304 80.6
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 5.7e-131 471.5 338 73.7
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 9.7e-131 470.7 341 71.3
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 9.7e-131 470.7 333 74.2
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.7e-130 469.9 302 78.8
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 4.8e-130 468.4 303 77.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 6.3e-130 468.0 365 67.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.4e-129 466.8 341 71.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.4e-129 466.1 294 79.3
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.1e-129 465.7 300 78.0
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.1e-129 465.7 299 78.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 5.3e-129 464.9 349 71.3
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 9.1e-129 464.2 299 78.3
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.2e-128 463.8 302 78.1
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 3.5e-128 462.2 299 77.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 3.5e-128 462.2 299 77.9
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 7.7e-128 461.1 341 70.1
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 7.7e-128 461.1 341 70.1
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 7.7e-128 461.1 341 70.1
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 7.7e-128 461.1 297 78.8
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 7.7e-128 461.1 299 77.6
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 7.7e-128 461.1 339 72.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.8e-127 458.8 348 70.7
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 5.0e-127 458.4 341 70.1
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.5e-126 456.8 348 70.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.2e-126 455.3 348 70.1
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 4.2e-126 455.3 338 68.6
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 7.2e-126 454.5 337 71.8
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.7e-125 452.6 337 71.2
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 2.7e-125 452.6 339 70.5
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 2.7e-125 452.6 339 70.2
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 3.6e-125 452.2 338 68.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 4.7e-125 451.8 293 79.5
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 6.1e-125 451.4 303 75.9
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 6.1e-125 451.4 348 71.0
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 8.0e-125 451.1 337 71.8
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.3e-124 449.5 342 70.2
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.3e-124 449.5 294 77.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.3e-124 449.5 297 76.1
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.5e-123 446.8 341 68.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.0e-123 446.4 295 75.6
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.0e-123 446.4 294 75.5
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.4e-123 445.3 294 77.2
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.8e-122 442.6 300 75.3
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 4.8e-122 441.8 297 76.1
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 8.3e-122 441.0 334 68.0
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.1e-121 440.7 338 68.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.8e-121 439.9 336 68.8
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.2e-120 437.2 316 70.6
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 4.5e-120 435.3 297 75.4
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-119 433.7 266 78.6
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 3.8e-119 432.2 335 67.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 3.2e-118 429.1 301 71.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-117 427.2 286 74.8
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.4e-116 423.7 343 66.2
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.2e-114 416.4 303 70.6
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.8e-114 416.0 344 64.8
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.3e-114 414.5 291 70.4
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-113 413.7 305 73.8
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.4e-113 413.7 339 64.6
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.4e-113 412.9 344 65.4
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.4e-113 412.9 247 85.4
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 9.2e-113 411.0 339 65.8
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.7e-112 409.5 294 69.4
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.9e-111 406.0 290 70.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 5.6e-110 401.7 321 68.5
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.3e-110 401.4 348 64.1
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.6e-109 399.1 254 79.9
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 4.7e-109 398.7 371 60.6
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.0e-108 397.5 395 58.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.5e-107 393.7 257 77.0
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 5.7e-107 391.7 247 76.5
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.9e-106 389.4 381 58.3
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 3.7e-106 389.0 289 68.5
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.1e-105 387.5 383 57.7
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.6e-104 383.6 271 71.2
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 2.0e-104 383.3 310 67.7
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.7e-104 382.9 334 64.7
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 6.8e-100 368.2 231 82.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.6e-96 355.5 310 61.9
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.2e-93 347.4 202 84.2
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 4.4e-91 339.0 202 81.7
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.7e-90 337.0 302 60.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 3.2e-89 332.8 339 55.8
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.5e-86 323.2 308 53.2
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 4.3e-86 322.4 298 54.7
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.2e-85 320.9 295 54.9
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 8.9e-84 314.7 295 54.6
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.5e-83 313.9 227 72.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.2e-82 310.1 195 76.9
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 5.4e-81 305.4 181 84.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 3.0e-71 273.1 232 55.6
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 2.7e-64 250.0 288 44.1
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 6.0e-64 248.8 191 67.0
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.8e-60 237.3 160 74.4
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 9.0e-60 235.0 138 84.8
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.3e-47 193.7 172 62.2
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.1e-33 148.3 350 34.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 9.1e-28 128.6 136 55.9
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 4.5e-19 99.8 95 56.8
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 3.2e-09 67.0 55 65.5
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.6e-08 64.7 44 75.0
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 8.8e-07 58.9 50 56.0
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 7.5e-06 55.8 90 40.0


User provided reference genes

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