Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.7e-65 251.9 131 100.0
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.4e-21 105.9 88 72.7
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.0e-13 77.4 54 79.6
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.2e-12 77.0 54 77.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.2e-12 77.0 50 86.0
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.5e-12 75.1 52 80.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.9e-12 74.7 52 80.8
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 5.9e-12 74.7 53 81.1
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 7.6e-12 74.3 52 82.7
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-11 73.9 52 80.8
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.0e-11 73.9 52 80.8
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.0e-11 73.9 52 80.8
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.0e-11 73.9 52 80.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.0e-11 73.9 52 80.8
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.3e-11 73.6 52 82.7
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.7e-11 73.2 50 82.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.7e-11 73.2 50 82.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.7e-11 73.2 50 80.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.7e-11 73.2 52 80.8
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.7e-11 73.2 52 80.8
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.2e-11 72.8 52 76.9
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.2e-11 72.8 52 80.8
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 2.9e-11 72.4 52 78.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.9e-11 72.4 52 78.8
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 3.8e-11 72.0 52 78.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 3.8e-11 72.0 52 78.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 5.0e-11 71.6 52 78.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 5.0e-11 71.6 52 78.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 5.0e-11 71.6 52 78.8
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 5.0e-11 71.6 50 80.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 6.5e-11 71.2 52 76.9
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 6.5e-11 71.2 52 78.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 8.4e-11 70.9 52 76.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 76.9
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 76.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 76.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 75.0
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 76.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 73.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.1e-10 70.5 52 76.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.1e-10 70.5 55 70.9
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.4e-10 70.1 52 78.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.4e-10 70.1 52 78.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.4e-10 70.1 52 78.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.4e-10 70.1 52 76.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.4e-10 70.1 52 75.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 78.0
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 78.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 78.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 78.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 78.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 76.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 1.9e-10 69.7 50 76.0
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.9e-10 69.7 52 75.0
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.5e-10 69.3 52 75.0
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 2.5e-10 69.3 52 76.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.5e-10 69.3 50 78.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.5e-10 69.3 50 78.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.5e-10 69.3 50 78.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.5e-10 69.3 52 75.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 3.2e-10 68.9 52 73.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.2e-10 68.9 52 76.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 3.2e-10 68.9 52 71.2
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 4.2e-10 68.6 52 76.9
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 4.2e-10 68.6 52 69.2
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 5.5e-10 68.2 52 75.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.2e-10 67.8 52 75.0
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 7.2e-10 67.8 52 75.0
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 7.2e-10 67.8 52 69.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 7.2e-10 67.8 52 73.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 9.3e-10 67.4 52 71.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.2e-09 67.0 52 69.2
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.2e-09 67.0 52 75.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.6e-09 66.6 52 75.0
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.1e-09 66.2 52 73.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.1e-09 66.2 50 74.0
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.1e-09 66.2 50 74.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.1e-09 66.2 51 68.6
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 6.1e-09 64.7 52 71.2
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 6.1e-09 64.7 52 71.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 7.9e-09 64.3 58 63.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 7.9e-09 64.3 50 70.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.8e-08 63.2 50 70.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.8e-08 63.2 50 70.0
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.3e-08 62.8 52 69.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 3.0e-08 62.4 52 69.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 3.9e-08 62.0 50 70.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.9e-08 62.0 52 69.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 5.1e-08 61.6 52 73.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 6.7e-08 61.2 43 81.4
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 8.7e-08 60.8 52 71.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.1e-07 60.5 48 72.9
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.1e-07 60.5 50 68.0
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.1e-07 60.5 52 65.4
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.5e-07 60.1 52 65.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.9e-07 59.7 52 67.3
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 3.3e-07 58.9 79 53.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 3.3e-07 58.9 52 63.5
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 4.3e-07 58.5 52 63.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 5.7e-07 58.2 52 65.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 5.7e-07 58.2 52 65.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 9.7e-07 57.4 48 68.8
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 9.7e-07 57.4 52 65.4
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 9.7e-07 57.4 52 65.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 9.7e-07 57.4 50 66.0
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.7e-06 55.5 48 66.7
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.7e-06 55.5 48 66.7
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.7e-06 55.5 48 66.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.7e-06 55.5 50 64.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.8e-06 55.1 51 64.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 6.3e-06 54.7 52 63.5


User provided reference genes

Program Settings