Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 0.0e+00 2483.8 1442 100.0
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 0.0e+00 1739.2 1509 70.3
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 0.0e+00 1451.0 1491 64.1
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 4.0e-287 992.3 1692 49.1
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 5.4e-276 955.3 1529 48.6
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 3.0e-274 949.5 1547 47.9
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 3.6e-264 916.0 1533 47.6
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 3.9e-258 896.0 1600 46.5
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 3.9e-258 896.0 1600 46.5
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 3.9e-258 896.0 1600 46.5
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 6.2e-248 862.1 1466 46.4
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 4.5e-246 855.9 1494 44.4
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.4e-244 850.1 1760 44.7
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.1e-240 837.0 1513 43.5
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 4.9e-237 825.9 1593 44.1
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.5e-236 823.5 1517 42.8
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.2e-235 821.2 1586 44.6
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.8e-234 817.4 1487 47.0
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.7e-232 809.7 1539 42.0
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 3.1e-231 806.6 1549 45.8
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.0e-229 801.6 1546 41.5
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 4.2e-228 796.2 1542 44.0
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.9e-226 789.6 1824 43.4
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.7e-225 785.8 1544 43.4
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.6e-222 776.9 1589 43.7
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.2e-216 757.3 1522 40.9
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 4.8e-216 756.1 1592 41.8
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.0e-213 746.1 1526 42.0
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 5.5e-212 742.7 1535 44.0
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.5e-209 734.6 1519 39.6
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.7e-203 713.0 1554 42.4
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 6.1e-203 712.6 1586 43.4
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.5e-201 708.0 1519 42.5
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.2e-195 688.3 1762 41.5
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 2.6e-193 680.6 1554 40.2
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.1e-191 675.2 1586 40.9
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 9.1e-191 672.2 1524 42.3
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 2.5e-188 664.1 1523 40.4
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 2.1e-187 661.0 1524 41.1
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 8.0e-187 659.1 1534 41.6
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.6e-179 633.6 1524 41.8
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.6e-177 627.5 1564 39.4
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 5.9e-174 616.3 1760 40.6
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 4.3e-172 610.1 1495 39.5
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.0e-170 605.5 1499 42.0
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 9.8e-169 599.0 1577 40.1
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 4.9e-168 596.7 1410 37.7
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.9e-167 594.7 1508 39.8
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 7.0e-167 592.8 1490 41.1
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.1e-164 585.5 1592 41.5
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.2e-163 579.7 1258 44.8
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 4.9e-160 570.1 1511 40.8
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.1e-154 552.4 1543 40.7
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 6.6e-149 533.1 1573 37.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 3.6e-147 527.3 1552 36.6
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.8e-144 517.3 1190 38.5
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 9.3e-143 512.7 1542 34.1
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.5e-140 504.6 1518 37.7
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 6.2e-139 500.0 1507 36.2
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 3.1e-138 497.7 1231 40.1
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 9.9e-137 492.7 1549 33.9
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 3.5e-134 484.2 1485 40.1
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 3.0e-133 481.1 1047 44.1
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 6.6e-133 479.9 1488 36.8
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.1e-131 474.9 1492 38.0
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 2.8e-131 474.6 1504 36.2
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 4.2e-127 460.7 1539 34.6
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.1e-126 458.4 1542 37.9
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 6.9e-122 443.4 1217 35.6
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.3e-120 439.1 965 39.0
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 7.9e-118 429.9 1574 35.1
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.3e-117 428.3 1557 36.0
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.7e-117 426.8 1092 40.0
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 3.7e-115 421.0 1169 38.5
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 5.1e-109 400.6 1481 33.4
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 7.4e-108 396.7 1676 37.4
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 4.8e-107 394.0 1260 37.0
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.4e-106 392.5 1265 35.5
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 4.5e-105 387.5 1474 35.5
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.0e-104 386.3 1126 39.8
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 4.5e-97 360.9 405 56.0
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.2e-95 354.8 283 76.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.6e-94 351.3 1114 37.3
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 6.1e-94 350.5 606 52.0
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 2.2e-91 342.0 1524 32.5
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 1.8e-90 339.0 1448 31.2
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 7.0e-90 337.0 1556 33.7
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.8e-85 322.4 725 36.6
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.7e-83 314.7 1586 29.9
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-77 296.2 236 65.7
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.5e-76 292.7 1461 29.8
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.7e-76 290.8 710 35.9
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.6e-73 282.7 1559 28.9
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.7e-72 279.3 1452 31.0
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 6.5e-72 277.3 1138 32.2
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.0e-69 268.1 742 35.6
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 2.6e-68 265.4 161 75.2
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 4.9e-67 261.2 477 47.6
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 4.5e-65 254.6 1742 30.3
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.9e-63 249.2 140 79.3
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 4.4e-60 238.0 1235 31.8
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 2.9e-59 235.3 547 43.7
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 4.9e-59 234.6 701 39.1
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 3.7e-51 208.4 179 56.4
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.4e-50 206.5 100 91.0
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.6e-49 203.0 324 42.6
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.9e-47 196.1 234 46.6
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.3e-47 195.3 714 34.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 5.6e-47 194.5 103 78.6
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.1e-45 190.3 164 64.6
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.6e-41 176.4 562 31.9
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 6.6e-40 171.0 178 52.8
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 7.3e-39 167.5 154 51.9
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 6.8e-37 161.0 195 46.2
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.5e-36 159.8 744 37.5
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 5.8e-36 157.9 128 56.2
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.0e-33 147.9 72 88.9
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.0e-33 147.9 72 88.9
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 8.6e-32 144.1 104 70.2
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 3.6e-30 138.7 942 31.3
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.8e-29 136.3 663 29.4
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 1.6e-22 113.2 111 58.6
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.4e-21 109.4 94 59.6
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 6.9e-21 107.8 212 38.2
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.0e-16 94.0 136 31.6
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 5.1e-16 91.7 131 34.4
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 6.7e-16 91.3 185 37.8
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-15 90.1 140 27.9
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.5e-15 90.1 431 27.1
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 5.6e-15 88.2 154 37.7
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 8.1e-14 84.3 114 35.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.1e-13 84.0 115 33.0
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 9.0e-13 80.9 96 36.5
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 3.4e-12 79.0 259 27.8
Hund18872 Selenicereus undatus HOM05D005457 ORTHO05D006350 7.1e-10 71.2 474 23.6
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 6.7e-08 64.7 43 67.4
Psat6g076520 Pisum sativum HOM05D005457 ORTHO05D006350 6.2e-06 58.2 285 29.1
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 8.1e-06 57.8 92 40.2


User provided reference genes

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