Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.5e-224 781.9 437 100.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 2.5e-184 649.0 436 83.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.1e-176 623.6 426 84.3
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 8.1e-167 590.9 437 77.3
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.3e-164 583.6 465 73.5
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 9.3e-163 577.4 450 74.4
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.2e-162 577.0 437 75.5
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.6e-159 566.6 449 74.2
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.1e-159 566.2 449 73.5
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-159 565.8 438 74.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.8e-159 565.1 449 73.3
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.8e-159 565.1 449 73.3
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.1e-159 564.3 438 74.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.4e-158 563.5 447 73.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.8e-158 563.1 437 74.8
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.1e-158 562.4 438 74.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 3.1e-158 562.4 447 73.8
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.1e-158 562.4 438 74.2
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 4.0e-158 562.0 446 72.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.2e-157 560.5 449 73.5
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-157 558.9 438 74.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.8e-157 558.1 437 74.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.2e-156 556.2 448 73.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.9e-156 555.8 442 73.1
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.9e-155 553.1 437 71.9
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 8.7e-153 544.3 436 73.2
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.1e-152 543.9 448 71.4
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.5e-152 542.7 447 70.2
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.3e-152 542.3 448 73.0
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 7.4e-152 541.2 691 53.4
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 4.8e-151 538.5 437 70.5
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.4e-150 536.2 447 68.9
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.2e-149 533.9 437 70.3
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 2.0e-149 533.1 437 69.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 2.0e-149 533.1 438 69.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.4e-149 532.3 435 69.7
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 3.4e-149 532.3 437 69.3
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.6e-149 531.2 439 69.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.7e-148 530.0 447 68.9
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 3.8e-148 528.9 427 72.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.4e-148 528.1 437 70.3
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 6.4e-148 528.1 438 71.5
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 8.4e-148 527.7 455 65.7
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 3.2e-147 525.8 444 69.1
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.1e-146 523.1 414 74.2
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 6.7e-145 518.1 437 69.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 6.7e-145 518.1 456 67.5
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 9.6e-144 514.2 448 66.3
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.3e-143 513.8 439 67.9
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 4.8e-143 511.9 438 66.9
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 6.2e-143 511.5 438 69.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.8e-142 510.0 446 67.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.8e-142 510.0 445 67.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.5e-141 506.9 448 67.2
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.5e-141 505.4 442 68.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.8e-141 505.0 439 67.2
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 5.8e-141 505.0 443 65.2
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 2.9e-140 502.7 454 66.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 4.9e-140 501.9 442 67.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 6.5e-140 501.5 448 66.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.3e-139 497.7 442 66.5
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.2e-138 497.3 445 67.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.1e-138 496.5 437 67.0
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 4.6e-138 495.4 445 65.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.3e-137 493.8 437 67.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.7e-137 491.5 454 64.8
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.5e-136 489.6 441 64.4
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 5.7e-136 488.4 441 68.5
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.3e-135 487.3 448 65.2
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.6e-135 486.9 428 67.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.6e-135 486.9 428 67.1
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.6e-135 486.9 445 65.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.4e-134 483.8 441 65.3
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 9.0e-134 481.1 436 66.5
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.2e-133 480.7 443 65.0
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.0e-133 479.9 451 65.4
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.6e-133 479.6 443 64.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.6e-133 479.6 434 66.6
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.5e-132 474.9 436 66.1
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-131 474.2 381 73.0
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.1e-131 474.2 439 64.9
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.9e-131 473.4 446 63.2
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 4.2e-131 472.2 447 62.2
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 4.2e-131 472.2 414 67.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.6e-130 470.3 445 65.6
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.8e-129 466.8 436 64.7
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.8e-129 466.8 436 65.4
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.0e-129 466.1 437 65.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 4.3e-128 462.2 477 61.6
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 9.7e-128 461.1 403 66.0
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.7e-127 459.1 444 64.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.3e-119 434.1 438 61.9
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 4.5e-117 425.6 436 62.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.1e-114 416.8 436 61.0
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-112 410.6 328 75.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-107 394.4 316 72.2
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.2e-104 384.4 357 67.2
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.7e-103 380.6 458 52.8
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-102 375.9 392 59.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.2e-99 366.3 429 53.4
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.2e-96 357.8 380 57.9
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.6e-96 356.7 361 59.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.7e-96 355.5 424 52.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.5e-93 346.3 453 50.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 6.6e-92 342.0 456 48.5
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-91 340.5 269 71.7
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 6.1e-90 335.5 441 49.7
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 2.7e-85 320.1 419 51.3
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.1e-83 314.7 456 48.5
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 9.5e-83 311.6 350 55.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 6.4e-79 298.9 271 63.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.2e-69 268.1 228 71.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.3e-68 264.6 248 64.5
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.1e-67 261.5 205 74.6
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 4.0e-65 253.1 336 52.4
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 5.8e-64 249.2 369 50.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.7e-60 237.7 191 68.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 9.6e-59 231.9 270 57.0
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.6e-58 231.1 249 60.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-54 216.5 312 51.9
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.6e-50 203.4 166 68.1
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.4e-48 196.8 445 36.4
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.2e-47 194.1 366 39.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-46 191.4 188 62.8
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 4.6e-45 186.4 376 37.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.3e-42 178.3 466 34.5
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 8.1e-42 175.6 271 44.3
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-41 175.3 152 65.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-41 174.9 144 68.1
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.1e-38 162.5 128 71.9
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.9e-31 140.6 163 55.2
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-31 140.2 133 63.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.2e-29 135.2 173 53.2
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.4e-25 120.9 147 53.7
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 2.0e-24 117.9 94 71.3
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-18 98.6 95 64.2
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.6e-18 98.2 69 75.4
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 2.2e-18 97.8 67 83.6
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.7e-18 97.1 110 57.3
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 7.2e-14 82.8 189 39.2
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.3e-10 72.0 67 64.2
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.0e-08 64.7 37 86.5
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 4.2e-06 57.0 185 28.1


User provided reference genes

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