Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 3.0e-216 755.0 402 100.0
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.5e-175 619.8 381 87.9
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.2e-170 602.1 379 86.0
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.7e-169 599.0 386 84.7
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.4e-168 596.7 418 79.7
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.8e-168 596.3 398 81.9
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.0e-168 595.1 389 84.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.1e-167 593.6 398 82.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.6e-167 592.4 389 84.3
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.3e-167 592.0 407 79.4
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 4.4e-167 591.7 409 80.2
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.5e-167 590.9 392 81.6
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 9.7e-167 590.5 371 86.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 9.7e-167 590.5 398 82.2
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.2e-166 589.3 342 90.9
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.2e-166 589.3 376 83.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 6.3e-166 587.8 375 84.5
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 8.2e-166 587.4 407 79.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.4e-165 586.6 398 81.7
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.4e-165 586.6 405 79.8
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.4e-165 585.9 372 84.4
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 4.1e-165 585.1 376 84.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.3e-165 584.7 369 85.4
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 5.3e-165 584.7 377 82.8
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 7.0e-165 584.3 384 80.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-164 583.2 404 79.5
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.0e-164 582.8 404 80.2
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.7e-164 582.4 402 79.6
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.7e-164 582.4 370 84.6
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.0e-163 580.5 403 80.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.0e-163 580.5 400 79.5
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.7e-163 579.7 369 82.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.2e-163 579.3 399 79.9
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 2.2e-163 579.3 369 82.7
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.9e-163 578.9 395 80.8
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 5.0e-163 578.2 402 79.1
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.5e-163 577.8 374 83.7
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 6.5e-163 577.8 369 84.0
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.5e-162 576.6 369 82.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 3.2e-162 575.5 411 78.1
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 3.2e-162 575.5 403 79.4
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 3.2e-162 575.5 408 77.2
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 4.2e-162 575.1 375 82.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 5.5e-162 574.7 397 78.8
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 7.2e-162 574.3 400 79.5
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 7.2e-162 574.3 383 82.0
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 6.1e-161 571.2 403 78.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 6.1e-161 571.2 403 78.7
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 8.0e-161 570.9 412 77.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 8.0e-161 570.9 373 80.2
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-160 570.1 389 80.2
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 2.3e-160 569.3 389 79.4
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 3.0e-160 568.9 368 84.0
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 3.0e-160 568.9 408 78.4
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 5.2e-160 568.2 403 78.7
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 5.2e-160 568.2 381 79.5
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 5.2e-160 568.2 377 82.5
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 6.8e-160 567.8 403 78.2
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 6.8e-160 567.8 410 77.6
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.8e-160 567.4 423 75.2
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.8e-160 567.4 423 75.2
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 8.8e-160 567.4 391 78.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.2e-159 567.0 375 82.1
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-159 565.8 426 74.6
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.4e-159 565.5 402 77.4
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.4e-159 565.5 377 81.4
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 7.5e-159 564.3 405 77.3
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 7.5e-159 564.3 393 78.9
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 7.5e-159 564.3 417 75.8
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 9.8e-159 563.9 406 77.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.8e-159 563.9 423 74.9
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.8e-159 563.9 423 74.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.2e-158 562.8 386 79.8
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.8e-158 562.4 378 81.2
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.8e-158 562.4 378 80.7
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.7e-158 562.0 407 76.2
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.7e-158 562.0 369 81.6
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 8.3e-158 560.8 398 78.6
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.4e-157 560.1 381 79.3
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.4e-157 560.1 403 77.7
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.4e-157 560.1 377 81.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.1e-157 558.5 407 76.4
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 5.4e-157 558.1 384 78.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.2e-156 557.0 368 81.2
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.2e-156 557.0 395 76.5
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.6e-156 556.6 379 78.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-156 556.2 406 76.1
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.9e-156 554.7 325 88.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 7.7e-156 554.3 402 76.9
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 3.8e-155 552.0 392 78.1
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.8e-155 552.0 389 78.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 6.5e-155 551.2 368 82.1
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.5e-154 548.1 404 74.3
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.5e-154 548.1 404 74.3
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 7.2e-154 547.7 383 79.1
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.1e-153 546.2 384 77.9
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.7e-153 545.8 389 75.3
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.8e-152 543.1 409 73.3
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 4.0e-152 542.0 374 77.5
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.0e-151 539.7 377 76.4
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 9.8e-151 537.3 385 75.3
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.2e-150 536.2 406 74.6
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.9e-150 535.0 385 74.8
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.0e-148 529.6 362 78.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.7e-148 529.3 434 69.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 5.9e-148 528.1 378 74.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 5.0e-147 525.0 333 80.2
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.1e-146 523.9 296 90.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 2.5e-146 522.7 296 90.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-145 520.4 369 78.0
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 3.6e-145 518.8 373 76.7
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 8.0e-145 517.7 306 85.9
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.4e-141 505.0 377 75.1
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 2.7e-140 502.7 296 87.5
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.7e-140 502.7 398 69.1
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.9e-138 496.5 373 70.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-138 495.4 349 77.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 6.2e-137 491.5 372 71.8
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.0e-136 490.7 351 76.1
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.4e-136 490.3 407 71.0
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-136 490.0 340 79.7
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.6e-132 476.9 328 73.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.3e-130 469.2 417 63.8
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.7e-126 456.8 317 72.6
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.9e-120 434.5 378 68.8
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-118 430.6 271 84.9
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.9e-118 429.5 245 91.8
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.1e-116 423.3 351 68.9
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.8e-113 412.9 350 64.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.3e-107 394.0 294 68.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.1e-104 384.4 340 59.7
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.5e-98 364.0 309 61.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.3e-91 340.9 197 90.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-82 311.2 197 83.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.1e-82 311.2 197 83.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.5e-77 292.4 166 88.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.2e-69 266.2 371 49.6
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.4e-64 251.1 294 45.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 2.3e-59 233.8 299 44.5
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.8e-57 226.9 128 86.7
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.5e-55 219.9 328 42.1
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 5.9e-55 219.2 202 63.9
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.0e-54 216.1 154 76.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.2e-49 200.7 178 64.0
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.5e-37 160.6 213 48.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.8e-36 157.1 149 57.7
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 2.6e-34 150.6 131 67.2
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 2.9e-30 137.1 80 86.2
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.8e-27 127.9 118 61.9
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 3.7e-17 93.6 75 66.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 4.6e-15 86.7 48 91.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.5e-13 80.9 60 71.7
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.3e-13 80.5 90 52.2
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 9.5e-13 79.0 62 67.7
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.1e-11 75.5 42 81.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 3.2e-08 63.9 43 72.1


User provided reference genes

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