Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.3e-123 446.4 230 100.0
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.9e-123 445.3 230 99.6
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 7.2e-90 334.3 233 79.4
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 9.4e-82 307.4 227 72.7
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 6.7e-80 301.2 250 68.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 5.0e-75 285.0 178 81.5
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 9.4e-74 280.8 167 85.0
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 9.4e-74 280.8 160 86.2
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.7e-73 279.3 231 68.0
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 3.0e-72 275.8 163 83.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 5.2e-72 275.0 238 63.9
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 5.2e-72 275.0 237 65.8
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 8.8e-72 274.2 240 64.6
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-71 273.5 233 66.1
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 2.6e-71 272.7 236 66.5
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.4e-71 271.9 169 80.5
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 9.8e-71 270.8 227 64.3
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.3e-70 270.4 220 67.3
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.7e-70 270.0 233 65.2
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 3.7e-70 268.9 233 64.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 4.8e-70 268.5 231 64.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 6.3e-70 268.1 236 63.1
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.1e-69 267.3 194 72.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.4e-69 266.9 165 81.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.8e-69 266.5 163 81.0
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 4.1e-69 265.4 243 64.2
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.4e-69 265.0 159 82.4
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 9.1e-69 264.2 234 61.5
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.6e-68 263.5 169 78.7
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.0e-68 263.1 209 68.4
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.0e-68 263.1 209 68.4
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 3.5e-68 262.3 223 63.7
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 4.5e-68 261.9 164 79.9
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 4.5e-68 261.9 227 67.0
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 7.7e-68 261.2 242 63.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 1.3e-67 260.4 240 61.7
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.7e-67 260.0 209 67.9
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.8e-67 258.8 224 65.2
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.8e-67 258.8 231 64.5
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 5.0e-67 258.5 161 80.7
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 5.0e-67 258.5 225 65.3
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.6e-67 258.1 228 64.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.5e-66 256.9 160 81.9
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 4.2e-66 255.4 232 62.9
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 9.5e-66 254.2 158 79.7
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 2.8e-65 252.7 237 62.0
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 2.8e-65 252.7 151 82.8
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.0e-64 250.8 221 64.7
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.4e-64 250.4 243 59.3
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.3e-64 249.6 227 63.9
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 3.0e-64 249.2 182 71.4
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 3.0e-64 249.2 166 76.5
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.0e-64 248.8 156 80.1
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 6.8e-64 248.1 188 70.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 6.8e-64 248.1 223 61.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-63 246.9 230 63.5
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.7e-63 245.0 227 60.4
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 7.5e-63 244.6 164 75.6
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 7.5e-63 244.6 166 72.3
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-62 243.8 161 76.4
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.2e-62 243.0 226 62.4
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 2.8e-62 242.7 226 59.7
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 4.9e-62 241.9 223 62.8
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 4.9e-62 241.9 198 67.7
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.1e-61 240.7 164 73.2
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.1e-61 240.7 164 73.2
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.4e-61 240.4 236 60.6
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.4e-61 239.6 164 75.6
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.4e-61 239.6 182 70.3
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 3.1e-61 239.2 164 74.4
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 3.1e-61 239.2 147 78.9
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.1e-61 238.8 233 59.7
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 5.4e-61 238.4 182 69.8
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 7.0e-61 238.0 140 81.4
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-60 237.3 164 72.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.2e-60 237.3 164 72.6
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.6e-60 236.9 227 59.0
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 2.0e-60 236.5 164 73.2
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 2.7e-60 236.1 227 60.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 4.5e-60 235.3 157 72.6
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 5.9e-60 235.0 177 68.4
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.3e-59 233.0 163 71.8
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 2.9e-59 232.6 167 71.3
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.9e-59 232.3 183 67.2
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.6e-59 231.5 129 84.5
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.1e-58 230.7 164 70.1
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.5e-58 230.3 189 65.6
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.9e-58 229.9 181 66.3
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 2.5e-58 229.6 170 68.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 2.5e-58 229.6 170 68.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 2.5e-58 229.6 170 68.8
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 2.5e-58 229.6 129 84.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.3e-58 229.2 164 69.5
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 4.3e-58 228.8 183 65.6
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 4.3e-58 228.8 164 69.5
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-57 227.3 168 70.2
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.6e-57 226.9 189 64.6
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 4.7e-57 225.3 164 70.1
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 6.1e-57 224.9 128 82.0
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 6.1e-57 224.9 217 60.8
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 6.1e-57 224.9 161 68.9
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 8.0e-57 224.6 162 71.6
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 1.0e-56 224.2 240 55.4
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 3.1e-56 222.6 188 62.2
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 4.0e-56 222.2 162 70.4
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-55 220.7 133 78.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.5e-55 220.3 133 78.2
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.5e-55 220.3 133 78.2
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 5.8e-55 218.4 155 72.9
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.4e-53 213.8 123 81.3
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.1e-53 212.2 230 56.5
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 6.6e-51 204.9 128 76.6
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 6.2e-49 198.4 162 60.5
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 6.2e-49 198.4 130 70.0
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 3.1e-48 196.1 136 72.8
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.9e-48 194.5 145 62.8
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.4e-45 186.4 149 60.4
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.4e-45 186.4 149 60.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.2e-44 184.1 184 54.3
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.6e-44 183.7 148 59.5
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 9.5e-42 174.5 123 74.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.2e-36 157.5 177 55.9
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.5e-34 150.6 80 88.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 4.3e-34 149.1 78 91.0
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 3.2e-29 132.9 118 59.3
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 2.7e-28 129.8 81 84.0
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 8.7e-27 124.8 139 48.2
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 9.9e-23 111.3 140 44.3
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 2.4e-21 106.7 120 45.0
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 8.7e-19 98.2 61 73.8
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 5.6e-18 95.5 59 74.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.1e-17 93.6 68 76.5
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 5.8e-15 85.5 49 79.6
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 5.8e-15 85.5 51 80.4
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.7e-14 84.0 105 46.7
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 7.1e-13 78.6 61 72.1
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 3.5e-12 76.3 48 75.0
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.3e-11 73.6 46 69.6
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 2.1e-09 67.0 33 90.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 3.4e-07 59.7 74 47.3


User provided reference genes

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