Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.5e-69 266.2 140 100.0
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 4.8e-28 128.3 137 57.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 5.3e-27 124.8 70 88.6
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 5.3e-27 124.8 81 76.5
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-26 123.6 70 87.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-26 123.2 81 76.5
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.6e-26 122.5 81 76.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.4e-26 122.1 81 76.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.4e-26 122.1 70 87.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.4e-26 122.1 81 76.5
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 5.8e-26 121.3 70 84.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.8e-26 121.3 81 75.3
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 5.8e-26 121.3 70 87.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 5.8e-26 121.3 81 75.3
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 5.8e-26 121.3 70 84.3
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 9.9e-26 120.6 106 63.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.3e-25 120.2 123 56.9
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.3e-25 120.2 70 84.3
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.3e-25 120.2 81 77.8
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.7e-25 119.8 141 53.2
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.2e-25 119.4 70 82.9
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.2e-25 119.4 70 82.9
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.9e-25 119.0 106 63.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.8e-25 118.6 69 85.5
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 3.8e-25 118.6 69 85.5
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.8e-25 118.6 70 84.3
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.9e-25 118.2 107 61.7
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 4.9e-25 118.2 70 84.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.9e-25 118.2 70 82.9
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 6.4e-25 117.9 127 59.8
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 8.4e-25 117.5 105 62.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 8.4e-25 117.5 81 71.6
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.1e-24 117.1 81 72.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-24 117.1 70 81.4
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.1e-24 117.1 107 60.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.1e-24 117.1 70 81.4
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.4e-24 116.7 70 82.9
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.4e-24 115.9 70 78.6
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.4e-24 115.9 69 81.2
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.4e-24 115.9 69 81.2
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.4e-24 115.9 70 82.9
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.2e-24 115.5 70 82.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.2e-24 115.2 70 84.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.2e-24 115.2 81 74.1
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.2e-24 115.2 72 77.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.2e-24 115.2 70 81.4
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 4.2e-24 115.2 70 82.9
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.5e-24 114.8 81 72.8
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 5.5e-24 114.8 70 80.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 5.5e-24 114.8 69 79.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 7.1e-24 114.4 70 78.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.3e-24 114.0 80 72.5
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 9.3e-24 114.0 70 81.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.2e-23 113.6 81 71.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 2.7e-23 112.5 111 58.6
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.5e-23 112.1 70 77.1
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 3.5e-23 112.1 70 80.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.5e-23 112.1 70 77.1
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 3.5e-23 112.1 69 81.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 4.6e-23 111.7 70 78.6
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 4.6e-23 111.7 70 78.6
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 4.6e-23 111.7 70 78.6
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 4.6e-23 111.7 70 78.6
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 4.6e-23 111.7 70 78.6
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.6e-23 111.7 69 79.7
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 6.0e-23 111.3 70 78.6
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 6.0e-23 111.3 70 80.0
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.0e-23 111.3 81 70.4
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 6.0e-23 111.3 107 57.9
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 6.0e-23 111.3 70 77.1
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.0e-23 111.3 70 78.6
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 6.0e-23 111.3 132 53.0
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.0e-22 110.5 81 71.6
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.0e-22 110.5 70 77.1
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.0e-22 110.5 70 77.1
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.0e-22 110.5 81 69.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.3e-22 110.2 70 77.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.3e-22 110.2 69 76.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.3e-22 110.2 69 79.7
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.3e-22 110.2 106 58.5
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-22 110.2 70 78.6
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.8e-22 109.8 79 70.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.3e-22 109.4 134 53.0
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.3e-22 109.4 69 78.3
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.0e-22 109.0 70 75.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.0e-22 109.0 70 77.1
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 3.9e-22 108.6 105 61.0
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.9e-22 108.6 70 77.1
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.9e-22 108.6 70 77.1
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 3.9e-22 108.6 125 53.6
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 5.1e-22 108.2 69 78.3
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.7e-22 107.8 70 77.1
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 6.7e-22 107.8 70 77.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 8.7e-22 107.5 136 50.0
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 8.7e-22 107.5 79 68.4
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 8.7e-22 107.5 70 74.3
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.1e-21 107.1 70 75.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-21 107.1 70 74.3
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 2.5e-21 105.9 68 76.5
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.3e-21 105.5 70 75.7
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.3e-21 105.5 68 76.5
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 5.6e-21 104.8 79 67.1
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 7.4e-21 104.4 70 68.6
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 7.4e-21 104.4 68 76.5
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-20 103.2 68 73.5
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-20 103.2 68 73.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-19 100.5 70 65.7
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.1e-19 99.0 70 68.6
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.0e-19 98.6 68 72.1
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 9.0e-19 97.4 70 71.4
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 9.0e-19 97.4 68 72.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.6e-18 95.9 70 65.7
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.4e-18 95.5 70 65.7
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.0e-17 94.0 69 65.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.7e-17 93.2 70 71.4
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 4.9e-17 91.7 70 70.0
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 6.5e-17 91.3 55 76.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.1e-16 90.5 70 65.7
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.9e-16 89.7 74 66.2
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.9e-16 89.7 68 64.7
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.9e-16 89.7 81 58.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.2e-16 88.6 70 67.1
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.3e-16 87.4 70 62.9
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.6e-15 86.7 80 63.8
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.6e-15 86.7 70 70.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.0e-15 84.7 83 55.4
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 6.7e-14 81.3 81 53.1
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.1e-13 80.5 69 62.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.3e-13 78.6 70 60.0
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-11 73.9 50 78.0
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.1e-11 73.9 69 59.4
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.4e-11 72.8 65 60.0
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.1e-11 72.0 69 63.8
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 2.6e-10 69.3 45 66.7
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.5e-10 68.6 34 82.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.1e-08 63.9 34 76.5
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 7.2e-08 61.2 70 57.1
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 4.6e-07 58.5 37 86.5
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.8e-06 56.6 37 78.4
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.8e-06 56.6 37 78.4


User provided reference genes

Program Settings