Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 0.0e+00 1322.0 684 100.0
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 0.0e+00 1151.7 682 86.8
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 0.0e+00 1135.2 682 84.2
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 0.0e+00 1126.3 726 81.4
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.9e-302 1040.0 680 77.8
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 2.8e-299 1031.6 676 76.9
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 7.9e-294 1013.4 684 77.8
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.0e-293 1013.1 682 76.8
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.8e-293 1012.3 681 76.7
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.4e-287 992.6 678 75.5
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.6e-286 988.0 680 74.4
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 3.9e-285 984.6 682 74.2
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 1.1e-284 983.0 682 73.9
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.3e-280 969.5 677 72.4
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.2e-278 963.0 684 73.2
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.6e-276 955.3 688 71.9
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.3e-276 954.9 672 72.3
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 5.7e-276 954.1 682 72.3
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 7.4e-276 953.7 682 70.4
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.8e-275 951.8 682 72.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 3.7e-275 951.4 685 71.1
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.1e-274 949.9 682 72.3
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 5.3e-274 947.6 682 71.7
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 8.5e-272 940.3 685 71.4
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 7.2e-271 937.2 686 71.1
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.8e-269 932.6 684 71.3
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.0e-269 931.8 673 71.8
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.5e-268 929.5 682 71.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 9.7e-268 926.8 683 68.7
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 2.8e-267 925.2 674 70.0
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 2.4e-266 922.2 684 70.8
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 7.0e-266 920.6 684 70.9
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.5e-265 918.3 677 70.3
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.9e-265 917.5 683 70.3
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.0e-264 916.8 709 68.3
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 8.5e-264 913.7 675 71.3
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 7.2e-263 910.6 683 70.0
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 2.7e-262 908.7 672 69.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.7e-262 908.7 677 70.0
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 6.1e-262 907.5 682 69.8
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 6.1e-262 907.5 682 70.2
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.8e-259 897.9 682 69.8
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.1e-258 896.7 599 76.8
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 4.1e-258 894.8 679 69.4
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.6e-257 892.9 705 66.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.0e-256 890.2 678 66.5
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 5.5e-255 884.4 681 67.5
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.2e-252 876.7 693 65.9
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 8.3e-251 870.5 678 67.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.6e-249 866.3 678 66.8
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.0e-248 863.6 690 66.7
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.1e-247 860.1 719 63.6
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 7.8e-241 837.4 601 71.5
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-240 836.6 728 62.0
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.5e-239 832.4 684 63.2
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 7.5e-236 820.8 675 65.6
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.4e-234 815.8 634 67.0
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 8.6e-232 807.4 678 62.2
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.5e-231 805.8 693 62.6
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.6e-230 803.1 678 63.7
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.1e-230 802.7 682 63.2
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.1e-230 802.7 486 81.9
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.3e-229 799.3 600 69.2
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 8.9e-229 797.3 688 62.6
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 2.6e-228 795.8 686 62.5
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 8.3e-227 790.8 689 62.6
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.4e-226 790.0 690 61.6
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.9e-226 789.6 670 61.9
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 5.4e-226 788.1 685 62.2
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.7e-225 785.8 685 62.0
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 5.6e-223 778.1 685 61.3
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 3.6e-222 775.4 681 61.8
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.1e-221 773.9 684 62.1
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 6.8e-221 771.2 683 60.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 6.8e-221 771.2 685 61.0
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 3.0e-216 755.7 634 62.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.6e-215 751.5 676 60.4
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 7.3e-215 751.1 667 61.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 9.6e-215 750.7 606 65.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.3e-214 750.4 584 67.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.1e-213 747.3 684 58.6
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 2.0e-212 743.0 687 58.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.3e-211 740.3 680 59.3
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 8.4e-211 737.6 677 59.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 9.3e-210 734.2 501 74.9
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.1e-207 727.2 620 62.1
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.1e-202 710.7 680 58.5
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.1e-190 669.8 683 54.8
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.1e-189 667.5 713 52.3
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 3.4e-188 662.5 674 54.3
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 7.2e-186 654.8 648 56.5
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.3e-184 649.8 679 52.4
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.7e-171 607.1 609 57.3
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 6.5e-171 605.1 603 56.1
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 3.7e-150 536.2 697 45.8
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 3.1e-149 533.1 616 50.3
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.0e-139 499.2 301 78.1
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.2e-137 494.6 462 55.2
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.1e-129 467.2 280 78.2
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 4.0e-128 463.0 702 42.0
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-117 428.3 353 60.1
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.3e-78 298.5 306 56.5
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 6.5e-78 296.2 218 68.8
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.5e-47 194.1 104 86.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.5e-46 189.9 107 83.2
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.2e-45 186.4 107 81.3
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.0e-43 181.0 103 81.6
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 3.8e-38 164.1 419 33.4
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 2.0e-34 151.8 200 49.0
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-34 151.0 103 69.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.8e-33 147.9 88 79.5
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.5e-18 99.0 68 69.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 5.4e-16 90.5 325 25.5
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.5e-15 87.8 66 65.2
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 8.6e-14 83.2 182 33.5
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.3e-13 81.3 47 78.7


User provided reference genes

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