Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 5.1e-67 257.7 136 100.0
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.8e-43 179.5 137 70.8
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.1e-42 176.8 136 66.2
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.4e-40 169.1 135 64.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 5.3e-40 167.9 138 64.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 9.0e-40 167.2 129 66.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-39 166.8 135 62.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.6e-39 165.6 135 60.7
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 3.4e-39 165.2 135 61.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.4e-39 165.2 135 61.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 4.5e-39 164.9 137 65.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.5e-39 164.9 135 61.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.6e-39 164.1 134 61.9
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.3e-38 163.3 132 64.4
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 4.9e-38 161.4 129 64.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.9e-38 161.4 136 61.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.9e-37 159.5 138 60.1
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.5e-37 157.9 130 63.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 7.1e-37 157.5 136 61.8
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.6e-36 156.4 131 61.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.1e-36 156.0 137 60.6
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-35 153.3 137 58.4
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.3e-35 153.3 135 62.2
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.3e-35 152.5 142 57.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 3.9e-35 151.8 135 59.3
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 5.1e-35 151.4 139 58.3
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 6.7e-35 151.0 137 63.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.7e-35 151.0 137 57.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.1e-34 150.2 130 60.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.5e-34 149.8 139 56.8
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-34 149.1 137 57.7
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.5e-34 149.1 129 57.4
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.3e-34 148.7 138 58.7
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.3e-34 148.7 139 59.7
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.3e-34 148.3 133 60.2
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 9.6e-34 147.1 137 58.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.6e-33 146.4 129 61.2
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.1e-33 146.0 134 59.7
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.8e-33 145.6 130 60.8
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.8e-33 145.6 133 58.6
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 6.2e-33 144.4 138 55.1
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.2e-33 144.1 139 57.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.1e-32 143.7 132 56.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-32 143.3 137 63.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.4e-32 143.3 139 57.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.8e-32 142.9 138 56.5
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 4.5e-31 138.3 136 58.1
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 4.5e-31 138.3 129 55.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 5.8e-31 137.9 137 56.2
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 7.6e-31 137.5 137 55.5
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.0e-30 137.1 142 54.9
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.7e-30 136.3 129 57.4
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.9e-30 135.6 137 61.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.8e-30 135.2 132 56.8
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 8.4e-30 134.0 135 56.3
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.5e-29 132.5 129 58.9
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.2e-29 132.1 131 56.5
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.2e-29 131.7 133 56.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 7.1e-29 131.0 129 53.5
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 7.1e-29 131.0 137 52.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 9.3e-29 130.6 138 52.9
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.6e-28 129.8 113 59.3
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.7e-28 129.0 118 58.5
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.3e-27 126.7 134 50.0
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.3e-27 126.7 135 52.6
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.8e-27 126.3 135 54.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 5.1e-27 124.8 127 52.0
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 5.1e-27 124.8 137 54.0
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 6.7e-27 124.4 130 55.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 6.7e-27 124.4 146 50.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.9e-26 122.9 147 45.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 4.3e-26 121.7 146 49.3
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 7.4e-26 120.9 126 50.0
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 8.2e-25 117.5 132 53.0
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.8e-24 116.3 136 49.3
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.4e-24 115.9 125 52.8
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-23 113.6 136 49.3
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.5e-23 113.2 125 47.2
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.5e-23 113.2 119 57.1
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.0e-23 112.8 99 56.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.6e-23 112.5 133 49.6
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.4e-23 112.1 136 49.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 4.5e-23 111.7 127 51.2
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 4.5e-23 111.7 131 49.6
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.5e-23 111.7 106 53.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.1e-21 107.1 132 48.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.9e-21 106.3 112 58.0
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.5e-21 105.9 125 46.4
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 4.2e-21 105.1 136 44.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 7.2e-21 104.4 112 56.2
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 9.4e-21 104.0 135 43.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.1e-20 102.8 135 43.0
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.7e-20 102.4 135 42.2
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.1e-20 101.3 147 47.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.0e-19 100.5 113 51.3
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-19 99.8 117 51.3
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.0e-19 99.0 130 43.1
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.9e-19 98.6 130 43.8
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.5e-18 95.9 115 49.6
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.3e-18 95.5 134 42.5
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 4.3e-18 95.1 115 47.8
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 4.3e-18 95.1 115 47.8
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.7e-18 94.7 118 50.0
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 2.8e-17 92.4 118 50.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 4.8e-17 91.7 115 47.0
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.1e-16 90.5 103 57.3
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 3.1e-16 89.0 115 46.1
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 5.3e-16 88.2 115 45.2
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.6e-15 85.9 115 45.2
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.6e-15 85.9 115 45.2
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 4.5e-15 85.1 115 45.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 5.9e-15 84.7 115 45.2
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 5.9e-15 84.7 116 44.8
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.0e-14 84.0 116 43.1
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.3e-14 83.6 115 45.2
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-14 83.6 115 45.2
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.7e-14 83.2 115 44.3
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.2e-14 82.8 137 40.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 2.9e-14 82.4 104 47.1
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.1e-13 80.5 135 45.2
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.1e-13 80.5 136 41.2
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.5e-13 79.3 126 41.3
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.2e-13 79.0 122 41.0
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 9.4e-13 77.4 129 38.8
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-12 77.0 86 51.2
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.2e-12 77.0 110 41.8
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.2e-12 77.0 134 35.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.7e-12 75.1 129 38.8
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 8.8e-11 70.9 141 35.5
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 8.8e-11 70.9 110 44.5
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 2.6e-10 69.3 129 32.6
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 9.7e-10 67.4 133 39.8
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.8e-09 65.9 136 36.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.8e-09 65.9 136 36.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.7e-09 65.5 127 34.6
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 3.7e-09 65.5 141 36.2
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 4.8e-09 65.1 142 36.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 3.4e-07 58.9 148 31.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 5.9e-07 58.2 141 32.6
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.0e-06 57.4 133 31.6
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 2.9e-06 55.8 136 30.9
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 2.9e-06 55.8 129 34.9
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 3.8e-06 55.5 148 29.7


User provided reference genes

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