Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 0.0e+00 1193.7 573 100.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.2e-242 843.2 581 72.6
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.7e-237 824.3 575 72.0
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.2e-236 822.4 575 71.8
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 4.1e-235 818.1 575 69.7
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 3.5e-234 815.1 577 69.8
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.7e-233 812.8 583 69.6
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.5e-232 809.7 574 69.3
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.5e-232 808.9 574 69.3
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 4.2e-232 808.1 574 69.3
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.5e-232 807.7 574 69.3
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.1e-231 805.8 574 69.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.0e-230 802.0 574 68.8
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.2e-229 800.0 574 69.7
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-229 800.0 574 69.2
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 2.0e-229 799.3 576 70.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 3.4e-229 798.5 576 68.4
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.7e-228 796.2 590 66.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.7e-228 796.2 581 68.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.8e-228 795.4 590 66.4
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.8e-227 792.7 581 68.3
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 5.4e-227 791.2 577 67.2
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 7.0e-227 790.8 573 68.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 9.1e-227 790.4 579 68.7
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.6e-226 789.6 627 64.3
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.7e-226 787.3 581 67.6
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.1e-224 783.5 579 67.5
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 1.5e-224 783.1 581 67.5
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.9e-224 782.7 579 67.5
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.9e-224 782.7 579 67.5
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.9e-224 782.7 586 66.0
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.5e-224 782.3 576 67.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 7.2e-224 780.8 574 67.9
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.6e-223 779.6 579 66.3
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.1e-223 779.2 579 66.3
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 4.7e-223 778.1 575 67.0
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 6.1e-223 777.7 581 66.6
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 6.1e-223 777.7 579 67.0
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-222 776.5 580 66.6
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.3e-222 775.8 586 66.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 4.0e-222 775.0 578 66.3
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 5.2e-222 774.6 581 66.6
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.0e-221 772.7 574 66.7
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.4e-221 771.9 578 66.8
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.4e-221 771.9 574 67.6
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 5.7e-221 771.2 574 65.9
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.3e-220 770.0 578 65.4
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.2e-220 769.2 580 66.0
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.8e-220 768.8 575 65.9
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.8e-220 768.8 579 66.7
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 3.7e-220 768.5 578 65.7
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.3e-220 767.3 578 65.6
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.1e-219 766.9 578 65.4
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.4e-219 766.5 583 66.4
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 3.1e-219 765.4 586 65.0
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 3.1e-219 765.4 578 65.7
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.4e-219 764.6 598 63.9
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.0e-219 764.2 592 65.2
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-218 761.5 565 66.7
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 5.9e-218 761.1 579 65.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.3e-217 759.2 577 65.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 5.0e-217 758.1 573 65.4
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-216 756.1 567 66.8
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 5.2e-214 748.0 573 64.7
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.0e-213 746.1 585 63.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.4e-213 745.3 578 64.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 9.8e-213 743.8 576 63.9
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 6.4e-212 741.1 573 63.7
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 8.3e-212 740.7 568 64.8
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.8e-211 739.6 585 62.9
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 4.1e-211 738.4 553 66.4
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 4.1e-211 738.4 583 63.8
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 7.0e-211 737.6 573 64.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 7.0e-211 737.6 573 62.8
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.5e-208 729.9 574 62.7
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.5e-208 729.2 580 62.2
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 4.3e-208 728.4 573 62.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 7.3e-208 727.6 575 62.4
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 7.3e-208 727.6 578 62.6
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 1.2e-207 726.9 582 63.4
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 2.1e-207 726.1 573 62.3
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 4.7e-207 724.9 574 62.0
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.1e-206 723.8 575 62.8
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.3e-206 722.6 582 62.2
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 2.3e-206 722.6 573 61.6
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 8.9e-206 720.7 573 62.1
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.2e-205 720.3 573 62.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.2e-205 720.3 582 61.9
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.0e-205 719.5 573 61.6
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.7e-204 716.5 573 61.4
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 8.3e-204 714.1 574 61.7
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 8.3e-204 714.1 574 61.7
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.1e-203 713.8 573 61.4
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.1e-203 713.8 578 61.9
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.9e-203 713.0 574 61.5
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.9e-203 713.0 574 61.5
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 6.0e-202 708.0 573 63.7
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 2.3e-201 706.1 597 59.1
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.2e-197 693.7 506 67.4
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 4.7e-191 671.8 506 65.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 6.2e-191 671.4 597 57.5
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.4e-190 670.2 638 55.2
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 6.8e-190 667.9 574 58.7
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-188 663.7 583 58.5
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.7e-185 653.3 543 62.4
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-174 617.5 505 61.2
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.5e-173 613.6 455 67.9
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.6e-173 611.3 470 64.7
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 4.2e-171 605.5 577 53.4
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.6e-170 602.1 524 57.6
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.9e-169 599.0 588 50.7
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.6e-167 593.6 579 52.7
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.0e-157 560.1 469 58.8
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.1e-155 554.3 469 58.4
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 3.2e-155 552.7 422 66.8
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.5e-155 552.0 422 66.4
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-154 549.7 422 65.9
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.8e-153 547.0 438 63.0
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 5.9e-149 531.9 577 48.0
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-143 513.8 295 80.3
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 3.8e-140 502.7 427 60.4
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 6.5e-140 501.9 454 56.6
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-139 500.7 418 60.8
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.4e-137 494.2 422 60.9
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.9e-129 466.1 456 54.2
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 7.0e-126 455.3 421 56.5
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-107 394.8 221 81.4
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.9e-95 353.6 543 37.6
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 3.3e-91 340.1 482 39.6
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.7e-90 336.3 227 68.7
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.7e-87 326.6 306 56.9
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.0e-84 317.0 186 81.2
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.4e-78 296.2 158 86.7
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.4e-78 296.2 158 86.7
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.6e-77 294.7 527 35.9
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-75 287.3 158 85.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 2.4e-54 217.6 241 48.1
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.8e-50 203.4 518 28.6
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.2e-45 188.7 106 83.0
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-45 187.6 106 84.0
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-44 184.5 93 92.5
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-44 184.5 93 92.5
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.0e-39 169.1 138 56.5
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.3e-36 158.7 119 68.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.2e-34 151.4 91 78.0
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 7.7e-24 116.3 76 75.0
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.9e-23 114.4 67 77.6
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.5e-22 111.3 69 79.7
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-20 105.5 65 67.7
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 5.7e-19 100.1 88 58.0
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.8e-17 95.1 68 69.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 2.3e-12 78.2 120 40.8


User provided reference genes

Program Settings