Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.2e-181 638.3 317 100.0
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 8.9e-115 417.5 317 70.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 8.4e-105 384.4 317 65.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 7.8e-103 377.9 323 64.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 5.6e-101 371.7 317 63.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.6e-100 370.2 318 63.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.1e-100 369.8 324 63.3
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.4e-99 367.1 317 64.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.0e-98 363.2 323 63.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 3.4e-98 362.5 317 61.5
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 3.4e-98 362.5 317 61.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.8e-97 359.0 317 62.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 6.4e-97 358.2 323 61.9
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 9.3e-96 354.4 324 59.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.2e-95 354.0 323 61.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.7e-95 352.8 323 61.3
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 6.0e-95 351.7 323 60.7
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.1e-93 347.4 317 61.5
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.3e-93 345.9 317 61.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.3e-93 345.9 328 57.6
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 9.6e-93 344.4 295 63.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.8e-92 342.8 317 60.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.8e-92 342.8 317 60.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.1e-92 341.3 319 58.0
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.2e-90 337.4 317 58.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.8e-90 335.1 317 57.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.4e-88 329.7 320 57.8
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.8e-86 323.6 319 56.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.3e-86 323.2 328 56.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.3e-86 323.2 325 57.5
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 6.7e-86 321.6 322 55.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.6e-85 317.8 288 60.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.8e-84 316.2 319 55.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.2e-84 315.1 367 51.2
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.4e-83 313.9 288 60.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-83 313.5 288 59.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.8e-83 313.5 320 57.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 5.8e-82 308.5 291 59.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-81 307.4 309 56.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-81 307.4 309 56.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-80 303.9 414 46.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.2e-80 302.8 318 55.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.7e-79 299.7 330 53.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.9e-78 295.8 320 54.1
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.7e-78 294.7 324 56.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.1e-77 294.3 427 44.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.3e-77 292.7 321 54.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 5.6e-77 292.0 319 54.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.4e-77 291.6 321 54.5
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.2e-76 288.5 299 55.2
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 5.3e-75 285.4 317 50.8
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.7e-73 280.4 320 51.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.5e-72 276.6 206 73.3
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.9e-71 271.6 288 54.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.3e-69 265.8 214 67.3
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.8e-68 263.1 319 48.9
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.8e-68 262.3 317 48.6
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.2e-66 257.7 330 48.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.1e-63 246.9 328 47.3
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.1e-63 245.4 322 47.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.0e-62 243.0 194 66.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 5.1e-62 242.3 311 51.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 8.7e-62 241.5 326 45.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.3e-61 239.6 264 53.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 9.7e-61 238.0 202 64.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.3e-60 235.3 336 43.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.5e-56 223.4 217 56.7
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 4.2e-56 222.6 278 48.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 9.4e-56 221.5 327 45.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.1e-55 220.3 327 45.0
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.1e-55 220.3 327 45.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.7e-55 219.9 278 48.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.6e-55 219.5 205 59.0
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 6.1e-55 218.8 327 44.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.4e-54 217.6 330 44.8
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.8e-54 217.2 311 49.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.8e-54 217.2 328 43.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.8e-54 217.2 273 48.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 6.7e-54 215.3 327 44.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-53 214.5 352 40.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.6e-53 213.4 323 43.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.3e-53 213.0 357 42.3
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.2e-52 210.3 356 42.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.3e-52 208.8 326 40.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.8e-51 207.2 321 43.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 5.3e-51 205.7 155 71.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.5e-50 202.6 318 41.2
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.9e-50 202.2 374 39.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.8e-49 199.5 326 40.8
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.8e-49 199.5 325 40.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.2e-48 196.4 336 43.5
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.6e-47 194.1 206 53.4
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.6e-47 194.1 262 44.7
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.7e-47 193.4 324 41.4
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.1e-47 192.2 320 42.2
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.8e-46 190.7 314 41.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.1e-45 188.0 317 41.0
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 4.4e-45 186.0 329 41.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.7e-45 184.9 328 40.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 9.7e-45 184.9 319 40.4
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 9.7e-45 184.9 328 40.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-44 183.7 308 41.6
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.8e-44 183.3 329 42.6
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.8e-43 180.6 336 36.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.3e-43 179.1 320 41.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 7.0e-43 178.7 206 52.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.5e-42 176.4 330 37.9
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.3e-41 174.5 318 37.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.2e-41 173.7 185 55.1
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.8e-41 172.9 339 37.2
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 5.5e-40 169.1 331 37.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.1e-39 167.2 195 50.8
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.5e-37 158.7 207 48.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.7e-36 157.5 351 35.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.8e-36 156.0 287 39.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-35 154.8 164 57.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.1e-35 152.9 316 38.9
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 5.3e-35 152.5 319 35.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.5e-32 143.7 244 39.3
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.2e-32 143.3 291 36.8
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.2e-32 143.3 331 34.1
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.4e-30 137.9 219 42.9
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-30 137.5 156 50.0
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.8e-28 130.2 149 50.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.0e-26 124.0 332 31.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.5e-24 115.9 202 41.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.5e-24 115.9 323 31.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.1e-23 114.0 226 35.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-23 113.6 202 40.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.0e-22 110.2 128 53.1
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 8.8e-22 108.6 323 31.3
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.2e-21 108.2 224 35.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.3e-20 104.8 233 35.2
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.7e-20 104.4 254 32.7
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 1.7e-20 104.4 82 67.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.1e-19 101.7 82 64.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-18 97.4 185 40.0
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.5e-16 91.3 176 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.3e-16 89.7 330 30.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.0e-14 85.1 82 54.9
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.7e-13 79.3 83 48.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.4e-12 75.9 137 39.4
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.3e-08 63.5 94 42.6
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.3e-08 63.5 69 47.8
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-07 61.2 99 35.4
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.2e-07 59.3 95 41.1
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 8.0e-07 58.9 69 44.9
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.8e-06 55.8 125 32.8


User provided reference genes

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