Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 4.6e-129 464.5 229 100.0
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.5e-95 353.2 230 77.4
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 2.1e-41 173.3 199 51.3
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 6.2e-25 118.6 173 42.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.6e-23 113.2 217 40.1
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.7e-22 110.5 210 40.0
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-21 107.1 176 39.2
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 4.1e-21 105.9 181 38.1
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 5.4e-21 105.5 197 37.6
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 5.4e-21 105.5 193 38.3
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 9.2e-21 104.8 165 40.0
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.2e-21 104.8 197 37.6
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.6e-20 104.0 165 40.0
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.6e-20 104.0 139 46.0
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.1e-20 103.6 195 36.9
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 3.5e-20 102.8 139 45.3
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 3.5e-20 102.8 184 38.0
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 6.0e-20 102.1 148 39.2
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.0e-19 101.3 197 39.6
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 3.0e-19 99.8 184 38.6
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 3.9e-19 99.4 184 37.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.9e-18 97.1 139 40.3
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.9e-18 97.1 224 34.4
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 4.3e-18 95.9 133 43.6
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.1e-17 93.6 232 33.6
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.8e-17 93.2 133 42.9
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 6.2e-17 92.0 172 36.6
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 6.2e-17 92.0 142 38.7
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 8.1e-17 91.7 188 36.7
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.1e-16 91.3 165 35.8
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.8e-16 90.5 138 38.4
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-16 90.5 145 40.0
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.8e-16 90.5 162 35.2
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.4e-16 90.1 229 30.1
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 4.0e-16 89.4 170 35.3
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 5.2e-16 89.0 151 39.1
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 5.2e-16 89.0 213 34.7
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 6.8e-16 88.6 139 40.3
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.2e-15 87.8 122 38.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.5e-15 87.4 142 37.3
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-15 87.4 136 41.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.5e-15 87.4 155 38.1
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.6e-15 86.7 151 38.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 2.6e-15 86.7 138 37.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 4.4e-15 85.9 136 39.7
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.4e-15 85.9 151 38.4
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 4.4e-15 85.9 116 40.5
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 7.6e-15 85.1 116 40.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.6e-15 85.1 132 37.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 7.6e-15 85.1 149 36.9
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 7.6e-15 85.1 149 36.2
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 9.9e-15 84.7 150 38.7
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.3e-14 84.3 133 39.1
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.3e-14 84.3 116 42.2
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.3e-14 84.3 115 41.7
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.7e-14 84.0 116 42.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.9e-14 83.2 151 37.7
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.9e-14 83.2 116 41.4
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.9e-14 83.2 116 41.4
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.8e-14 82.8 134 34.3
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 4.9e-14 82.4 116 41.4
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.4e-14 82.0 147 34.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 8.4e-14 81.6 133 38.3
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 8.4e-14 81.6 139 35.3
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-13 81.3 136 39.7
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-13 80.9 147 34.7
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.9e-13 80.5 115 39.1
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 2.4e-13 80.1 134 38.1
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 3.2e-13 79.7 139 36.7
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 4.2e-13 79.3 136 36.0
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 7.1e-13 78.6 121 42.1
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 7.1e-13 78.6 197 29.9
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 9.3e-13 78.2 200 33.5
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 9.3e-13 78.2 121 35.5
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 9.3e-13 78.2 121 42.1
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.2e-12 77.8 133 36.1
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-12 77.4 193 31.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-12 77.4 189 34.4
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.7e-12 76.6 219 28.3
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 4.6e-12 75.9 193 32.6
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 4.6e-12 75.9 189 35.4
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 4.6e-12 75.9 122 36.9
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 4.6e-12 75.9 122 35.2
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 7.8e-12 75.1 195 33.8
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 7.8e-12 75.1 195 33.8
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-11 74.3 195 33.3
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.7e-11 73.9 206 30.6
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.7e-11 73.9 121 37.2
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.7e-11 73.9 157 32.5
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-11 73.6 175 29.7
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.3e-11 73.6 138 34.1
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 2.3e-11 73.6 138 34.1
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.3e-11 73.6 116 40.5
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 3.0e-11 73.2 110 41.8
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.1e-11 72.4 129 36.4
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 5.1e-11 72.4 135 34.1
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 5.1e-11 72.4 135 34.1
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 5.1e-11 72.4 137 33.6
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 6.6e-11 72.0 121 34.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 6.6e-11 72.0 134 34.3
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 6.6e-11 72.0 201 29.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 8.7e-11 71.6 184 31.5
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 8.7e-11 71.6 132 40.2
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 8.7e-11 71.6 118 38.1
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 8.7e-11 71.6 121 36.4
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.1e-10 71.2 141 34.0
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 1.1e-10 71.2 139 30.2
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.1e-10 71.2 139 30.2
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 3.3e-10 69.7 118 38.1
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 3.3e-10 69.7 99 38.4
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 3.3e-10 69.7 123 35.8
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 4.3e-10 69.3 117 41.9
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 4.3e-10 69.3 133 34.6
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 4.3e-10 69.3 134 36.6
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.3e-10 68.6 135 28.1
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 9.6e-10 68.2 141 32.6
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 9.6e-10 68.2 141 32.6
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 9.6e-10 68.2 113 36.3
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-09 67.4 141 31.2
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 1.6e-09 67.4 141 31.2
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.6e-09 67.4 218 30.7
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.6e-09 67.4 101 44.6
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 2.1e-09 67.0 147 34.7
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 2.1e-09 67.0 147 34.7
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 2.1e-09 67.0 120 40.0
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 3.6e-09 66.2 141 31.9
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 3.6e-09 66.2 116 37.9
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 4.8e-09 65.9 116 37.1
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.1e-09 65.1 183 28.4
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.1e-08 64.7 141 29.1
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-08 64.3 143 30.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.4e-08 63.5 118 36.4
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 3.1e-08 63.2 96 38.5
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 3.1e-08 63.2 184 28.3
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.1e-08 63.2 117 31.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.3e-08 62.4 122 32.0
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 5.3e-08 62.4 118 36.4
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 5.3e-08 62.4 148 32.4
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.9e-08 62.0 157 28.0
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.9e-08 62.0 114 34.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.9e-08 62.0 117 35.9
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 6.9e-08 62.0 123 34.1
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.2e-07 61.2 134 32.1
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.2e-07 61.2 109 34.9
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-07 60.8 155 29.0
VMungo0464G0927 Vigna mungo HOM05D022012 ORTHO05D003856 1.5e-07 60.8 150 30.7
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 2.0e-07 60.5 147 33.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 2.6e-07 60.1 146 32.9
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 3.4e-07 59.7 215 26.5
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.8e-07 58.9 212 25.9
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 5.8e-07 58.9 141 28.4
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 5.8e-07 58.9 111 32.4
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 7.6e-07 58.5 228 26.3
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 7.6e-07 58.5 228 26.3
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-06 57.8 116 31.0
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-06 57.0 133 30.8
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-06 56.6 209 27.8
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 3.8e-06 56.2 125 30.4
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 3.8e-06 56.2 127 29.9
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.4e-06 55.1 208 25.5


User provided reference genes

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