Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p018814 Quercus lobata HOM05D004779 ORTHO05D005737 8.7e-180 634.0 453 100.0
CiPaw.13G125400 Carya illinoinensis HOM05D004779 ORTHO05D005737 1.0e-87 328.2 350 63.7
Cfa005492 Carpinus fangiana HOM05D004779 ORTHO05D005737 3.0e-87 326.6 350 81.4
Thecc.09G267300 Theobroma cacao HOM05D004779 ORTHO05D005737 2.4e-81 307.0 350 68.0
Duzib170G1005 Durio zibethinus HOM05D004779 ORTHO05D005737 7.8e-80 302.0 353 56.7
Atru.chr3.3301 Acer truncatum HOM05D004779 ORTHO05D005737 1.1e-78 298.1 360 63.6
Ciclev10027942m.g Citrus clementina HOM05D004779 ORTHO05D005737 4.3e-78 296.2 359 66.3
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 4.3e-78 296.2 350 59.7
MD11G1177500 Malus domestica HOM05D004779 ORTHO05D005737 8.1e-77 292.0 361 51.2
Prupe.6G149600 Prunus persica HOM05D004779 ORTHO05D005737 3.1e-76 290.0 360 58.1
GSVIVG01037513001 Vitis vinifera HOM05D004779 ORTHO05D005737 6.8e-76 288.9 350 55.4
MELO3C017381.2 Cucumis melo HOM05D004779 ORTHO05D005737 1.5e-75 287.7 360 51.1
RcHm_v2.0_Chr5g0049381 Rosa chinensis HOM05D004779 ORTHO05D005737 1.5e-75 287.7 362 51.7
ClCG06G014140 Citrullus lanatus HOM05D004779 ORTHO05D005737 3.4e-75 286.6 359 50.7
CSS0005993 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 4.4e-75 286.2 351 53.8
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 4.4e-75 286.2 351 53.8
MD03G1161400 Malus domestica HOM05D004779 ORTHO05D005737 4.4e-75 286.2 361 54.3
Sed0027738 Sechium edule HOM05D004779 ORTHO05D005737 7.5e-75 285.4 359 50.4
CANSAT54G2495 Cannabis sativa HOM05D004779 ORTHO05D005737 2.2e-74 283.9 359 52.6
Glyma.14G044700 Glycine max HOM05D004779 ORTHO05D005737 3.7e-74 283.1 359 53.2
Glyma.02G271700 Glycine max HOM05D004779 ORTHO05D005737 6.4e-74 282.3 359 53.5
Phvul.008G210200 Phaseolus vulgaris HOM05D004779 ORTHO05D005737 8.3e-74 282.0 359 52.9
VMungo0647G2327 Vigna mungo HOM05D004779 ORTHO05D005737 1.1e-73 281.6 359 52.6
Hma1.2p1_0218F.1_g092300 Hydrangea macrophylla HOM05D004779 ORTHO05D005737 1.4e-73 281.2 350 52.9
arahy.Tifrunner.gnm1.ann1.3IJ79N Arachis hypogaea HOM05D004779 ORTHO05D005737 1.9e-73 280.8 359 53.8
Gohir.A13G221700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 2.4e-73 280.4 350 52.0
Sed0007784 Sechium edule HOM05D004779 ORTHO05D005737 2.4e-73 280.4 362 48.9
TAR369G0205 Trochodendron aralioides HOM05D004779 ORTHO05D005737 4.1e-73 279.6 351 54.4
Potri.009G155400 Populus trichocarpa HOM05D004779 ORTHO05D005737 5.4e-73 279.3 359 57.9
Lj2g0019509 Lotus japonicus HOM05D004779 ORTHO05D005737 1.0e-71 275.0 359 52.6
Gohir.A07G114480 Gossypium hirsutum HOM05D004779 ORTHO05D005737 3.0e-71 273.5 350 59.1
arahy.Tifrunner.gnm1.ann1.GQ8P42 Arachis hypogaea HOM05D004779 ORTHO05D005737 6.6e-71 272.3 359 52.9
Gohir.D07G118400 Gossypium hirsutum HOM05D004779 ORTHO05D005737 8.6e-71 271.9 350 58.6
CsaV3_1G004540 Cucumis sativus L. HOM05D004779 ORTHO05D005737 2.5e-70 270.4 359 48.5
Gorai.001G127300 Gossypium raimondii HOM05D004779 ORTHO05D005737 2.5e-70 270.4 350 60.3
Ca_06128_v3 Cicer arietinum L. HOM05D004779 ORTHO05D005737 4.3e-70 269.6 359 52.1
Dinv32142 Davidia involucrata HOM05D004779 ORTHO05D005737 5.6e-70 269.2 350 52.9
Lalb_Chr04g0249841 Lupinus albus HOM05D004779 ORTHO05D005737 9.5e-70 268.5 350 53.1
Eucgr.J00599 Eucalyptus grandis HOM05D004779 ORTHO05D005737 1.2e-69 268.1 359 57.1
Potri.004G193300 Populus trichocarpa HOM05D004779 ORTHO05D005737 1.6e-69 267.7 360 55.3
FvH4_3g26940 Fragaria vesca HOM05D004779 ORTHO05D005737 2.8e-69 266.9 360 50.0
Nn2g14463 Nelumbo nucifera HOM05D004779 ORTHO05D005737 1.4e-68 264.6 360 48.1
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 3.1e-68 263.5 362 54.7
FAN25G2723 Fragaria x ananassa HOM05D004779 ORTHO05D005737 6.8e-68 262.3 351 51.9
FAN11G2927 Fragaria x ananassa HOM05D004779 ORTHO05D005737 8.9e-68 261.9 360 49.2
Manes.11G104300 Manihot esculenta HOM05D004779 ORTHO05D005737 1.5e-67 261.2 363 53.2
FAN16G1882 Fragaria x ananassa HOM05D004779 ORTHO05D005737 5.8e-67 259.2 360 50.6
Lalb_Chr10g0105761 Lupinus albus HOM05D004779 ORTHO05D005737 3.8e-66 256.5 359 50.1
Sc06g0008600 Simmondsia chinensis HOM05D004779 ORTHO05D005737 3.8e-66 256.5 350 50.3
Rhsim13G0199300 Rhododendron simsii HOM05D004779 ORTHO05D005737 1.1e-65 255.0 379 47.2
FAN21G0778 Fragaria x ananassa HOM05D011291 ORTHO05D005737 5.4e-65 252.7 371 47.4
Medtr5g086790 Medicago truncatula HOM05D004779 ORTHO05D005737 5.4e-65 252.7 360 50.6
vmacro04059 Vaccinium macrocarpon HOM05D004779 ORTHO05D005737 2.1e-64 250.8 366 47.3
Sopen11g029350 Solanum pennellii HOM05D004779 ORTHO05D005737 3.5e-64 250.0 361 46.3
COL.COLO4_25354 Corchorus olitorius HOM05D004779 ORTHO05D005737 4.6e-64 249.6 350 51.4
Gohir.D13G225700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 4.6e-64 249.6 350 54.6
Gorai.013G256500 Gossypium raimondii HOM05D004779 ORTHO05D005737 4.6e-64 249.6 350 53.1
TPR.G13298 Trifolium pratense HOM05D004779 ORTHO05D005737 1.3e-63 248.1 350 50.3
Aqoxy1G00564 Aquilegia oxysepala HOM05D004779 ORTHO05D005737 4.3e-62 243.0 353 49.0
Peaxi162Scf01091g00011 Petunia axillaris HOM05D004779 ORTHO05D005737 7.3e-62 242.3 361 48.5
Solyc11g071680.2 Solanum lycopersicum HOM05D004779 ORTHO05D005737 7.3e-62 242.3 361 45.4
Psat2g023720 Pisum sativum HOM05D004779 ORTHO05D005737 2.1e-61 240.7 350 49.7
Actinidia12899 Actinidia chinensis HOM05D004779 ORTHO05D005737 1.1e-60 238.4 350 53.7
Lsat_1_v5_gn_3_114561 Lactuca sativa HOM05D004779 ORTHO05D005737 1.4e-60 238.0 351 45.0
THA.LOC104799595 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 1.2e-59 235.0 359 43.7
HanXRQChr03g0091061 Helianthus annuus HOM05D004779 ORTHO05D005737 3.4e-59 233.4 351 45.0
AUR62020193 Chenopodium quinoa HOM05D004779 ORTHO05D005737 7.6e-59 232.3 351 44.2
HanXRQChr13g0420201 Helianthus annuus HOM05D004779 ORTHO05D005737 9.9e-59 231.9 351 44.7
Migut.D02461 Erythranthe guttata HOM05D004779 ORTHO05D005737 2.2e-58 230.7 353 49.9
Cc01_g08160 Coffea canephora HOM05D004779 ORTHO05D005737 6.4e-58 229.2 351 47.6
FAN21G1171 Fragaria x ananassa HOM05D004779 ORTHO05D005737 6.4e-58 229.2 206 62.6
CAN.G439.1 Capsicum annuum HOM05D004779 ORTHO05D005737 1.4e-57 228.0 362 47.2
Oeu051492.1 Olea europaea HOM05D004779 ORTHO05D005737 3.5e-56 223.4 351 46.4
PSO339G0772 Papaver somniferum HOM05D004779 ORTHO05D005737 1.3e-55 221.5 351 46.2
PGR119G0691 Punica granatum HOM05D004779 ORTHO05D005737 5.1e-55 219.5 359 50.1
Migut.O00734 Erythranthe guttata HOM05D004779 ORTHO05D005737 1.5e-54 218.0 195 68.2
THA.LOC104810971 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 4.8e-53 213.0 366 44.0
EL10Ac7g16253 Beta vulgaris HOM05D004779 ORTHO05D005737 1.4e-52 211.5 350 46.3
Medtr5g087050 Medicago truncatula HOM05D004779 ORTHO05D005737 1.8e-52 211.1 203 66.0
SalBow6G6366 Salvia bowleyana HOM05D004779 ORTHO05D005737 1.8e-52 211.1 353 42.8
Ah.08g222510 Amaranthus hybridus HOM05D004779 ORTHO05D005737 2.4e-52 210.7 351 41.9
SGA_v2.0_scaffold7G04016 Striga asiatica HOM05D004779 ORTHO05D005737 3.4e-51 206.8 360 45.8
ECA240G3152 Erigeron canadensis HOM05D004779 ORTHO05D005737 2.9e-50 203.8 195 60.5
Medtr5g087240 Medicago truncatula HOM05D004779 ORTHO05D005737 4.2e-49 199.9 203 63.5
AT5G20930 Arabidopsis thaliana HOM05D004779 ORTHO05D005737 7.9e-48 195.7 359 44.6
ATR0697G120 Amborella trichopoda HOM05D004779 ORTHO05D005737 1.8e-47 194.5 360 40.0
AL6G32490 Arabidopsis lyrata HOM05D004779 ORTHO05D005737 1.8e-47 194.5 359 40.4
DCAR_012261 Daucus carota HOM05D004779 ORTHO05D005737 2.5e-46 190.7 350 42.0
Thhalv10012855m.g Eutrema salsugineum HOM05D004779 ORTHO05D005737 2.5e-46 190.7 352 48.0
CDE05G1310 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 3.7e-45 186.8 361 38.0
Sp6g23590 Schrenkiella parvula HOM05D004779 ORTHO05D005737 5.3e-44 183.0 350 40.3
MSTRG.18803 Avicennia marina HOM05D004779 ORTHO05D005737 1.2e-43 181.8 362 41.2
Carub.0006s1924 Capsella rubella HOM05D004779 ORTHO05D005737 1.2e-43 181.8 359 40.9
CARHR191920 Cardamine hirsuta HOM05D004779 ORTHO05D005737 1.2e-43 181.8 359 41.8
Zm00001eb057260 Zea mays HOM05D004779 ORTHO05D005737 1.5e-43 181.4 182 61.0
BolC2t07083H Brassica oleracea HOM05D004779 ORTHO05D005737 2.0e-43 181.0 350 50.9
SHI25307 Sapria himalayana HOM05D000105 ORTHO05D005737 2.6e-43 180.6 196 56.6
BcaC03g13814 Brassica carinata HOM05D004779 ORTHO05D005737 7.6e-43 179.1 350 50.6
BNapus_Darmor_BZH_scaffold_38p01260 Brassica napus HOM05D004779 ORTHO05D005737 7.6e-43 179.1 350 49.4
C02p10520 Brassica napus HOM05D004779 ORTHO05D005737 7.6e-43 179.1 350 46.0
BraA02t05604Z Brassica rapa HOM05D004779 ORTHO05D005737 7.6e-43 179.1 350 46.0
BcaB05g22801 Brassica carinata HOM05D004779 ORTHO05D005737 9.9e-43 178.7 350 50.3
PSO384G0479 Papaver somniferum HOM05D004779 ORTHO05D005737 1.7e-42 177.9 351 41.0
HPP92_004176 Vanilla planifolia HOM05D004779 ORTHO05D005737 3.8e-42 176.8 360 39.4
BcaB08g37316 Brassica carinata HOM05D004779 ORTHO05D005737 2.5e-41 174.1 350 48.6
BcaC04g19491 Brassica carinata HOM05D004779 ORTHO05D005737 9.3e-41 172.2 351 44.2
C09p55170 Brassica napus HOM05D004779 ORTHO05D005737 9.3e-41 172.2 351 44.2
Aa31LG1G13840 Aethionema arabicum HOM05D004779 ORTHO05D005737 1.2e-40 171.8 377 38.5
Zm00001eb214860 Zea mays HOM05D004779 ORTHO05D005737 7.9e-40 169.1 182 58.2
BolC9t58378H Brassica oleracea HOM05D004779 ORTHO05D005737 2.3e-39 167.5 351 40.5
Os03g0749800 Oryza sativa ssp. japonica HOM05D004779 ORTHO05D005737 1.1e-38 165.2 194 54.1
Cpa.g.sc103.54 Carica papaya HOM05D004779 ORTHO05D005737 1.5e-38 164.9 376 43.4
BraA10t43988Z Brassica rapa HOM05D004779 ORTHO05D005737 2.5e-38 164.1 352 40.6
A10p19090 Brassica napus HOM05D004779 ORTHO05D005737 9.6e-38 162.2 352 39.8
AUR62001587 Chenopodium quinoa HOM05D004779 ORTHO05D005737 2.6e-35 154.1 363 35.5
CDE01G0346 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 1.7e-34 151.4 108 68.5
SMO340G0087 Selaginella moellendorffii HOM05D004779 ORTHO05D005737 8.2e-29 132.5 141 49.6
Hund20969 Selenicereus undatus HOM05D004779 ORTHO05D005737 4.5e-27 126.7 316 33.9
SMO356G0434 Selaginella moellendorffii HOM05D004779 ORTHO05D005737 2.9e-26 124.0 101 59.4
Mapoly0004s0128 Marchantia polymorpha HOM05D004779 ORTHO05D005737 5.0e-26 123.2 118 52.5
CBR_g5694 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-24 118.6 131 47.3
ECA238G1299 Erigeron canadensis HOM05D004779 ORTHO05D005737 8.8e-23 112.5 98 63.3
Haze_23617 Corylus avellana HOM05D004779 ORTHO05D005737 9.7e-22 109.0 61 90.2
MSTRG.20999 Avicennia marina HOM05D004779 ORTHO05D005737 5.3e-20 103.2 69 72.5
SEGI_33400 Sequoiadendron giganteum HOM05D004779 ORTHO05D005737 3.4e-19 100.5 59 83.1
Pp3c24_17430 Physcomitrium patens HOM05D004779 ORTHO05D005737 1.1e-17 95.5 123 43.9
Medtr5g087250 Medicago truncatula HOM05D004779 ORTHO05D005737 1.2e-16 92.0 124 50.0
FAN22G0927 Fragaria x ananassa HOM05D004779 ORTHO05D013607 5.1e-15 86.7 219 35.2
Medtr5g086970 Medicago truncatula HOM05D004779 ORTHO05D005737 4.4e-14 83.6 64 68.8
FAN02G4109 Fragaria x ananassa HOM05D004779 ORTHO05D005737 2.9e-10 70.9 217 38.2
Nitab4.5_0008410g0030 Nicotiana tabacum HOM05D004779 ORTHO05D005737 1.1e-09 68.9 223 30.9
arahy.Tifrunner.gnm1.ann1.V78EF7 Arachis hypogaea HOM05D000231 ORTHO05D000132 1.4e-07 62.0 40 80.0
MSTRG.21000 Avicennia marina HOM05D004779 ORTHO05D005737 1.4e-07 62.0 240 30.8
SHI25305 Sapria himalayana HOM05D004779 ORTHO05D005737 3.9e-07 60.5 42 69.0
Nitab4.5_0010066g0010 Nicotiana tabacum HOM05D004779 ORTHO05D005737 8.8e-07 59.3 38 73.7
MBI05_g37654_MAGBIO Magnolia biondii HOM05D004779 ORTHO05D005737 5.7e-06 56.6 38 81.6
ECA238G4738 Erigeron canadensis HOM05D004779 ORTHO05D005737 9.7e-06 55.8 57 50.9


User provided reference genes

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