Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 4.0e-120 434.9 237 100.0
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.6e-68 263.5 215 66.5
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 5.2e-67 258.5 213 66.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.5e-61 239.6 212 62.7
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 3.0e-51 206.1 225 50.7
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.5e-50 201.4 227 52.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.7e-49 199.1 238 51.3
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.7e-47 193.0 220 48.6
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-46 189.1 225 48.9
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.0e-46 188.7 223 51.1
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.9e-45 186.8 243 48.1
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 6.1e-44 181.8 227 50.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.2e-42 177.6 224 47.3
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.4e-42 175.6 225 49.3
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 7.5e-42 174.9 222 48.6
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 4.1e-40 169.1 223 47.5
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 7.0e-40 168.3 220 44.5
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.2e-39 167.5 222 46.8
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.5e-39 166.0 224 46.4
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.0e-38 164.5 208 47.6
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.3e-38 163.3 236 44.9
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.9e-38 162.5 222 45.5
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.0e-38 162.2 238 45.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 6.6e-38 161.8 233 44.2
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 6.6e-38 161.8 238 45.4
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 3.6e-36 156.0 220 45.5
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.8e-35 153.7 212 44.8
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.8e-35 153.7 209 44.0
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.8e-35 153.7 221 42.1
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.3e-35 153.3 215 46.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.1e-35 152.9 226 44.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 8.9e-35 151.4 212 42.9
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 4.4e-34 149.1 224 41.5
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.9e-33 146.4 216 44.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 6.4e-33 145.2 209 43.1
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.1e-32 144.4 228 43.9
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.4e-32 144.1 266 38.3
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.2e-32 142.9 221 42.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 4.1e-32 142.5 220 43.6
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.4e-32 142.1 223 40.4
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-31 141.0 209 42.1
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.6e-31 140.6 217 43.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.6e-31 140.6 227 43.2
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.6e-31 140.6 244 38.1
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.7e-31 139.8 213 40.8
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 4.6e-31 139.0 214 43.9
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.6e-31 139.0 213 41.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 6.0e-31 138.7 224 44.2
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.8e-31 138.3 211 44.1
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.0e-30 137.9 226 41.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.3e-30 137.5 225 40.9
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.7e-30 137.1 211 43.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 8.6e-30 134.8 218 44.5
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.1e-29 134.4 207 45.9
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.9e-29 133.7 221 42.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 3.3e-29 132.9 219 37.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.3e-29 132.9 115 56.5
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 7.3e-29 131.7 244 39.8
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.5e-29 131.3 235 41.3
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 9.5e-29 131.3 225 40.4
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.5e-29 131.3 225 40.4
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.2e-28 131.0 257 39.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.2e-28 131.0 208 42.8
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.6e-28 130.6 106 61.3
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.6e-28 130.6 220 40.9
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.1e-28 130.2 207 42.0
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.7e-28 129.0 225 39.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.2e-28 128.6 219 41.6
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 8.1e-28 128.3 213 40.4
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.1e-27 127.9 210 40.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.4e-27 127.5 212 42.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.4e-27 127.5 223 39.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.8e-27 127.1 165 46.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.8e-27 127.1 211 40.3
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.3e-27 126.7 209 40.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.3e-27 126.7 217 40.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.3e-27 126.7 225 39.1
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.3e-27 126.7 220 40.9
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.3e-27 126.7 170 43.5
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.1e-27 126.3 104 60.6
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 3.1e-27 126.3 218 40.4
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.1e-27 126.3 157 43.9
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 5.2e-27 125.6 215 37.7
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 8.9e-27 124.8 222 38.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.2e-26 124.4 227 39.2
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.0e-26 123.6 251 37.8
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.6e-26 123.2 128 50.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 3.4e-26 122.9 128 50.0
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.3e-25 120.9 207 43.0
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.3e-25 120.9 207 43.0
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.7e-25 120.6 207 38.2
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 4.9e-25 119.0 207 44.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 4.9e-25 119.0 207 44.4
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 4.9e-25 119.0 214 37.9
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.1e-24 117.9 209 37.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.4e-24 116.7 120 50.0
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.4e-24 116.7 92 67.4
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.2e-24 116.3 213 36.6
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.6e-23 114.0 185 39.5
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.1e-23 113.6 211 38.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.7e-23 113.2 213 38.0
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.7e-23 113.2 211 39.8
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-23 112.8 207 42.5
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.5e-23 112.8 205 42.0
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 4.6e-23 112.5 217 39.2
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.7e-22 110.5 217 38.7
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.3e-21 105.9 206 34.5
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 9.6e-21 104.8 236 34.7
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.2e-20 104.4 211 37.9
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.6e-20 102.8 220 35.5
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.4e-19 100.1 217 34.1
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 4.0e-19 99.4 198 36.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 8.9e-19 98.2 94 52.1
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.2e-18 97.8 234 35.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.5e-18 97.4 206 34.5
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.0e-18 97.1 207 35.3
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 5.8e-18 95.5 114 41.2
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 5.8e-18 95.5 108 47.2
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.7e-17 94.0 55 80.0
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 6.4e-17 92.0 112 47.3
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 6.4e-17 92.0 93 52.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-16 90.9 94 50.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.4e-16 89.0 210 33.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.6e-15 85.9 234 34.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.6e-13 79.0 225 35.1
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.1e-12 77.0 130 37.7
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.6e-12 76.3 134 39.6
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 2.4e-11 73.6 128 36.7
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-10 71.2 55 67.3
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 7.6e-10 68.6 45 64.4
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.7e-09 67.4 181 34.8
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.4e-08 63.5 97 32.0
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 4.2e-08 62.8 100 29.0


User provided reference genes

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