Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 4.7e-146 521.2 263 100.0
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 4.2e-86 322.0 221 74.7
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.0e-83 313.2 224 69.2
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 3.3e-83 312.4 224 68.3
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 1.4e-81 307.0 221 69.7
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 7.0e-81 304.7 223 67.3
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 9.1e-81 304.3 220 69.1
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.7e-80 302.8 220 69.5
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 3.8e-79 298.9 223 67.3
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 8.5e-79 297.7 218 67.4
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 3.2e-78 295.8 221 69.2
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 5.5e-78 295.0 221 68.3
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.2e-77 293.9 221 68.8
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 6.1e-77 291.6 221 68.3
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 1.4e-76 290.4 221 67.4
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.8e-76 290.0 220 65.0
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.0e-76 288.9 227 67.4
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 4.0e-76 288.9 216 64.8
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 5.2e-76 288.5 218 66.5
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 2.0e-75 286.6 221 64.3
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 7.5e-75 284.6 216 66.2
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 1.1e-73 280.8 220 64.1
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 2.4e-73 279.6 222 64.4
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 4.1e-73 278.9 219 65.8
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 4.1e-73 278.9 218 64.7
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.0e-73 278.1 231 64.5
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 5.0e-71 271.9 216 62.0
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 5.0e-71 271.9 221 61.5
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 5.5e-70 268.5 216 60.6
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 1.6e-69 266.9 208 64.9
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 3.6e-69 265.8 221 61.1
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 6.1e-69 265.0 222 59.9
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 8.0e-69 264.6 191 72.3
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 8.0e-69 264.6 220 60.5
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 2.6e-67 259.6 216 61.1
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 9.8e-67 257.7 234 56.0
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 9.8e-67 257.7 221 58.4
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 1.3e-66 257.3 221 57.5
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 4.9e-66 255.4 234 61.5
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 4.9e-66 255.4 221 57.0
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 6.3e-66 255.0 221 58.8
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.8e-65 253.4 221 59.7
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 3.1e-65 252.7 233 56.7
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 5.4e-65 251.9 224 58.5
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 7.0e-65 251.5 221 56.6
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 7.0e-65 251.5 221 56.6
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 9.2e-65 251.1 221 59.3
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 9.2e-65 251.1 224 59.4
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 1.2e-64 250.8 195 64.6
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 3.5e-64 249.2 220 57.7
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 1.9e-62 243.4 222 58.6
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 4.3e-62 242.3 221 56.1
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 5.6e-62 241.9 221 58.4
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 9.5e-62 241.1 221 55.7
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 2.8e-61 239.6 223 56.5
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 3.6e-61 239.2 226 55.3
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 6.1e-61 238.4 228 55.3
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 8.0e-61 238.0 221 55.7
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 1.4e-60 237.3 220 54.5
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 2.3e-60 236.5 230 54.3
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 3.0e-60 236.1 226 54.4
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 4.0e-60 235.7 220 56.4
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 4.0e-60 235.7 224 54.5
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 8.9e-60 234.6 221 55.7
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 1.2e-59 234.2 227 54.6
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 1.2e-59 234.2 220 55.5
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 1.5e-59 233.8 220 56.4
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 2.0e-59 233.4 223 55.2
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 2.6e-59 233.0 231 53.7
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 3.4e-59 232.6 222 55.0
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 3.4e-59 232.6 221 54.3
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 7.5e-59 231.5 245 52.7
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 1.3e-58 230.7 208 59.6
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 1.3e-58 230.7 230 53.0
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 1.7e-58 230.3 170 67.1
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 4.9e-58 228.8 225 52.0
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 8.3e-58 228.0 237 52.3
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 1.8e-57 226.9 218 52.3
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 5.4e-57 225.3 221 58.8
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.7e-55 220.3 249 49.8
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 3.0e-55 219.5 248 50.4
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 6.6e-55 218.4 219 52.5
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.1e-54 217.6 219 49.8
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 2.5e-54 216.5 141 69.5
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 4.3e-54 215.7 230 50.9
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 1.2e-51 207.6 199 54.8
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 5.8e-51 205.3 227 49.8
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 3.7e-50 202.6 220 51.4
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 4.9e-50 202.2 222 50.5
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.9e-49 200.3 200 53.0
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 1.2e-48 197.6 304 45.4
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 6.6e-47 191.8 218 46.3
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 3.3e-46 189.5 198 53.5
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 1.8e-44 183.7 194 49.0
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 2.9e-42 176.4 192 53.1
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.2e-40 171.0 221 45.2
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 2.1e-40 170.2 203 46.8
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 1.3e-39 167.5 249 42.2
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 2.5e-38 163.3 200 53.5
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.8e-36 157.1 184 47.3
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 5.2e-36 155.6 298 35.2
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 6.8e-36 155.2 277 39.0
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 1.2e-35 154.5 204 44.1
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 5.8e-35 152.1 164 50.6
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 5.8e-35 152.1 290 36.2
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 5.4e-33 145.6 140 57.9
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 3.5e-32 142.9 146 52.7
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 1.0e-31 141.4 226 39.4
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 5.1e-31 139.0 87 69.0
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 8.7e-31 138.3 142 55.6
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 2.8e-29 133.3 218 36.7
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 8.1e-29 131.7 241 36.5
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 8.1e-29 131.7 201 39.8
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 2.4e-28 130.2 73 78.1
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.4e-28 130.2 200 36.5
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 3.1e-28 129.8 73 78.1
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 4.0e-28 129.4 148 46.6
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 5.2e-28 129.0 235 35.3
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 1.5e-27 127.5 132 53.8
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.4e-20 103.6 75 72.0
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 9.9e-19 98.2 198 33.8
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 6.0e-16 89.0 106 50.0
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 6.9e-12 75.5 58 69.0
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.6e-11 73.6 167 31.7
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 1.6e-08 64.3 84 50.0
CAN.G34.12 Capsicum annuum HOM05D006082 ORTHO05D007616 1.5e-06 57.8 55 54.5


User provided reference genes

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