Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 9.5e-167 590.1 299 100.0
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 4.2e-90 335.5 309 65.0
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.6e-81 307.0 274 65.7
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 7.9e-81 304.7 375 53.6
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.8e-80 303.5 234 67.5
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 8.8e-80 301.2 296 59.8
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 9.7e-79 297.7 289 59.9
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 2.2e-78 296.6 262 65.6
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.2e-78 296.6 270 61.9
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.1e-77 294.3 231 66.7
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 1.8e-77 293.5 306 57.2
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.8e-77 293.5 270 61.1
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.8e-77 293.5 270 61.1
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 2.4e-77 293.1 307 57.7
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 2.4e-77 293.1 290 57.2
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 4.1e-77 292.4 231 66.7
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 2.0e-76 290.0 293 60.8
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 2.0e-76 290.0 231 66.2
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.0e-76 290.0 231 66.2
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.5e-76 288.9 269 60.6
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.7e-75 287.0 297 57.9
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 3.8e-75 285.8 314 55.1
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 1.1e-74 284.3 215 67.9
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 1.1e-74 284.3 273 60.4
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 1.4e-74 283.9 206 70.4
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 1.4e-74 283.9 217 66.8
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 2.5e-74 283.1 305 55.7
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 3.2e-74 282.7 285 58.9
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 4.2e-74 282.3 196 70.4
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 4.2e-74 282.3 222 66.7
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 5.5e-74 282.0 211 69.7
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.5e-74 282.0 231 65.4
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 7.2e-74 281.6 213 70.4
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 1.2e-73 280.8 298 56.0
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 2.1e-73 280.0 198 71.7
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 2.1e-73 280.0 273 57.1
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 3.6e-73 279.3 270 58.9
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.4e-72 277.3 289 57.1
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 3.9e-72 275.8 269 58.7
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 3.9e-72 275.8 255 62.0
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 6.7e-72 275.0 214 66.4
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 8.8e-72 274.6 315 51.7
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 8.8e-72 274.6 292 56.8
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 1.1e-71 274.2 280 56.1
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 1.1e-71 274.2 255 62.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 3.3e-71 272.7 290 55.5
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 4.4e-71 272.3 243 60.5
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 4.4e-71 272.3 308 53.9
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 4.4e-71 272.3 290 57.2
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 9.7e-71 271.2 273 56.8
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.3e-70 270.8 301 54.2
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.7e-70 270.4 236 64.0
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 2.8e-70 269.6 300 56.0
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 6.3e-70 268.5 289 55.0
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 6.3e-70 268.5 220 62.3
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 8.2e-70 268.1 291 55.7
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.8e-69 266.9 218 64.7
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 5.3e-69 265.4 263 57.8
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 7.0e-69 265.0 247 58.7
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 9.1e-69 264.6 187 73.3
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.6e-68 263.8 287 56.4
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 2.0e-68 263.5 244 59.0
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 4.5e-68 262.3 216 63.4
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 4.5e-68 262.3 292 53.8
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.0e-67 261.2 182 71.4
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 2.9e-67 259.6 245 58.4
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 2.9e-67 259.6 245 58.4
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 3.8e-67 259.2 236 60.2
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.8e-67 259.2 236 60.2
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 3.8e-67 259.2 319 52.7
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 3.8e-67 259.2 257 55.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 6.5e-67 258.5 196 68.4
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 6.5e-67 258.5 271 55.4
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 8.5e-67 258.1 267 56.9
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.1e-66 257.7 236 59.7
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.5e-66 257.3 283 53.7
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 2.5e-66 256.5 300 51.3
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 3.2e-66 256.1 274 55.5
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 4.2e-66 255.8 271 55.0
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 9.4e-66 254.6 268 54.9
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.2e-65 254.2 243 57.6
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.7e-65 253.1 297 53.9
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 6.1e-65 251.9 270 55.9
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 8.0e-65 251.5 213 60.6
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 3.7e-62 242.7 181 66.9
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 2.4e-61 240.0 246 54.9
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 3.5e-60 236.1 306 46.4
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 3.0e-56 223.0 314 51.0
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 1.5e-55 220.7 207 57.5
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 4.4e-55 219.2 392 40.3
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 1.8e-53 213.8 194 58.2
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 3.5e-52 209.5 196 56.6
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.6e-49 200.7 161 65.8
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 9.8e-47 191.4 218 47.2
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 8.3e-46 188.3 276 48.6
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 1.8e-45 187.2 163 53.4
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 1.8e-45 187.2 193 51.8
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 6.6e-43 178.7 205 45.4
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 1.2e-41 174.5 292 43.8
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.8e-41 173.3 210 56.7
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 3.9e-35 152.9 310 41.6
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.5e-34 150.2 86 81.4
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.2e-31 141.4 163 44.8
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 4.6e-28 129.4 121 56.2
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 1.7e-27 127.5 160 49.4
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 3.6e-25 119.8 166 42.2
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.7e-22 110.9 163 41.7
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 6.4e-22 109.0 151 51.0
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.1e-21 108.2 140 49.3
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 5.1e-19 99.4 207 41.1
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 8.6e-19 98.6 169 47.9
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.7e-11 74.3 102 39.2
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 6.6e-11 72.4 64 57.8
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 7.3e-10 68.9 76 53.9
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.0e-07 60.8 93 40.9


User provided reference genes

Program Settings