Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 6.5e-89 330.9 189 100.0
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 6.5e-89 330.9 189 100.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.6e-58 229.9 189 68.8
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.5e-56 222.6 157 74.5
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 7.3e-56 221.1 158 74.7
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 2.1e-55 219.5 159 74.2
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.5e-50 202.2 163 65.0
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 6.6e-49 198.0 187 59.9
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 4.3e-48 195.3 166 62.7
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 7.3e-48 194.5 164 62.8
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 4.7e-47 191.8 166 61.4
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-46 190.7 142 67.6
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.0e-45 186.4 162 61.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.0e-45 186.4 162 61.1
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.3e-44 183.7 142 66.2
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 1.7e-44 183.3 163 60.1
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 3.8e-44 182.2 196 57.1
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 4.9e-44 181.8 144 63.9
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 8.4e-44 181.0 139 66.2
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.1e-43 180.6 162 63.6
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.9e-43 179.9 145 67.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 4.2e-43 178.7 164 58.5
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 7.1e-43 177.9 171 60.2
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.2e-42 177.2 149 63.1
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 6.0e-42 174.9 166 57.2
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 7.8e-42 174.5 142 63.4
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.0e-41 174.1 134 65.7
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.3e-41 173.7 149 63.1
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 2.3e-41 172.9 171 57.9
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 2.3e-41 172.9 142 62.0
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 3.0e-41 172.6 159 61.0
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 5.1e-41 171.8 173 59.0
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 8.7e-41 171.0 191 53.4
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 8.7e-41 171.0 141 63.8
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 4.3e-40 168.7 163 58.9
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.3e-40 168.7 173 61.3
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 4.3e-40 168.7 162 57.4
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 4.3e-40 168.7 139 64.7
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 5.6e-40 168.3 173 61.3
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 5.6e-40 168.3 144 63.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 9.6e-40 167.5 168 56.0
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 3.6e-39 165.6 161 57.8
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.6e-39 165.6 145 62.1
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 6.2e-39 164.9 140 62.1
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.4e-38 162.9 142 61.3
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.4e-38 162.9 125 66.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.1e-38 162.5 170 52.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.2e-37 160.6 124 68.5
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.6e-37 159.5 173 54.9
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 3.4e-37 159.1 163 54.6
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 3.4e-37 159.1 145 60.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.4e-37 158.7 157 63.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.8e-37 158.3 134 62.7
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 9.9e-37 157.5 145 59.3
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 2.9e-36 156.0 121 63.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.9e-36 156.0 151 57.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 3.8e-36 155.6 126 64.3
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 2.4e-35 152.9 119 63.9
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.2e-35 152.5 146 58.2
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 4.2e-35 152.1 112 71.4
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.2e-35 152.1 146 60.3
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 5.4e-35 151.8 172 51.7
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 5.4e-35 151.8 135 60.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 5.4e-35 151.8 144 56.9
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 7.1e-35 151.4 133 60.2
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.2e-34 150.6 150 56.7
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.6e-34 150.2 137 59.9
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.5e-34 149.1 141 56.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 4.6e-34 148.7 132 61.4
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.6e-34 148.7 143 55.9
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.0e-34 148.3 126 59.5
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 7.8e-34 147.9 137 54.7
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 7.8e-34 147.9 144 56.2
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 7.8e-34 147.9 144 56.2
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.0e-33 147.5 148 54.1
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.3e-33 147.1 129 58.9
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.7e-33 146.7 145 56.6
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 8.7e-33 144.4 122 62.3
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-32 144.1 145 55.9
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.1e-32 144.1 154 57.1
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.5e-32 143.7 118 62.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.5e-32 143.7 146 53.4
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.9e-32 143.3 143 55.2
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.5e-32 142.9 132 56.8
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 5.6e-32 141.7 119 58.0
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.6e-32 141.7 148 52.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.3e-32 141.4 145 55.2
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 7.3e-32 141.4 170 49.4
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 7.3e-32 141.4 135 53.3
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 7.3e-32 141.4 143 58.7
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 9.6e-32 141.0 162 51.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.6e-31 140.2 135 56.3
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.6e-31 140.2 145 53.1
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.1e-31 139.8 147 54.4
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 3.6e-31 139.0 159 52.2
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.8e-31 138.7 121 61.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 4.8e-31 138.7 118 61.9
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 6.2e-31 138.3 144 51.4
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 107 60.7
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 8.1e-31 137.9 139 51.8
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-30 137.5 137 54.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.1e-30 137.5 107 60.7
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.4e-30 137.1 124 58.9
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.4e-30 137.1 124 58.9
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 2.4e-30 136.3 131 55.0
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.4e-30 136.3 107 65.4
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 5.3e-30 135.2 124 58.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.5e-29 132.1 122 60.7
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 5.8e-29 131.7 129 55.0
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.9e-29 131.0 110 62.7
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 9.9e-29 131.0 122 59.0
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.9e-28 129.4 131 54.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 7.1e-27 124.8 163 48.5
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 7.1e-27 124.8 132 53.0
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.6e-26 123.6 128 53.1
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 6.0e-26 121.7 151 46.4
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.3e-25 120.6 159 45.9
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 8.7e-25 117.9 109 57.8
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 2.8e-23 112.8 157 47.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 4.8e-23 112.1 136 47.1
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 6.2e-23 111.7 118 55.1
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.1e-22 110.9 127 48.0
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 2.1e-18 96.7 126 47.6
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 3.5e-18 95.9 118 55.1
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 6.7e-17 91.7 77 61.0
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 5.6e-16 88.6 147 39.5
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.4e-14 84.0 160 33.1
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 9.0e-14 81.3 124 37.9
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.4e-13 79.3 122 39.3
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 3.4e-13 79.3 166 31.3
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.4e-13 79.3 105 48.6
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 7.6e-13 78.2 113 39.8
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 2.2e-12 76.6 75 54.7
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 8.4e-12 74.7 77 49.4
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 5.1e-09 65.5 143 33.6
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 8.2e-07 58.2 49 57.1
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 8.2e-07 58.2 63 46.0
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 5.3e-06 55.5 50 56.0


User provided reference genes

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