Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 3618.6 1873 100.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2990.3 1872 82.3
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2881.3 1867 80.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2679.0 1872 74.5
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2678.7 1873 74.5
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2658.2 1861 73.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2655.9 1871 73.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2643.2 1869 73.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2642.1 1857 73.0
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2634.4 1872 73.3
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2624.4 1871 72.6
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2619.3 1899 72.5
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2611.6 1873 72.1
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2604.7 1899 72.1
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2599.3 1856 72.3
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2598.2 1871 72.0
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2585.8 1873 71.6
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2583.1 1869 71.8
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2574.7 1871 71.2
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2571.6 1872 71.2
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2568.9 1856 71.9
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2567.3 1868 71.6
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2560.4 1853 71.7
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2558.9 1861 72.1
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2557.3 1869 71.4
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2548.1 1866 71.0
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2543.5 1868 70.2
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2526.5 1866 70.1
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2518.4 1877 70.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2515.3 1867 70.7
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2501.1 1869 70.3
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2499.2 1871 70.0
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2491.1 1856 70.2
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2484.1 1857 69.8
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2478.7 1893 68.9
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2478.0 1881 69.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2475.3 1876 68.7
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2469.1 1870 68.6
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2464.5 1856 67.3
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2464.5 1857 67.4
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2463.0 1873 67.1
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2459.5 1862 68.2
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2447.5 1860 67.5
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2446.4 1904 68.1
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2440.2 1856 67.1
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2432.1 1868 67.4
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2431.0 2406 56.3
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2430.6 1877 66.7
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2429.8 1851 69.4
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2399.0 1872 67.0
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2389.8 1875 65.9
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2375.5 1868 64.8
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2375.1 1870 66.4
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2374.7 1872 65.5
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2372.8 1867 66.4
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2357.0 1867 65.4
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2345.5 1860 65.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2334.3 1884 65.2
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2331.6 1854 64.9
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2330.1 1868 64.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2328.9 1868 64.5
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2328.5 1880 64.5
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2327.7 1883 64.9
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2322.7 1866 64.1
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2317.3 1873 64.4
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2311.2 1859 64.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2307.3 1873 63.9
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2298.1 1867 63.9
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2295.0 2025 60.4
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2277.7 1878 64.1
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2268.4 1887 62.9
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2241.5 1870 62.8
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2238.8 1949 61.4
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2238.0 1861 62.9
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2148.6 1536 73.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2147.1 1859 59.9
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2090.1 1866 58.4
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2068.9 1452 74.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2059.3 1554 67.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 2044.6 1348 79.4
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1908.6 1408 69.2
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1896.7 1310 75.2
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1878.2 1452 67.3
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1872.8 1380 70.2
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1701.8 1341 67.4
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1629.4 1281 67.3
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1611.7 1931 46.5
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1598.2 1882 49.0
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1567.0 1930 45.8
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1558.1 1939 45.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1526.5 1152 67.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1491.5 1103 70.4
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1401.7 1704 46.0
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1357.0 1404 54.4
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1308.5 1172 58.0
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1177.2 1053 59.1
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1143.3 905 64.0
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.0e-287 993.0 886 57.8
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 2.4e-284 983.4 1607 36.7
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.9e-252 877.5 1783 33.8
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.3e-250 870.5 636 72.2
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.4e-237 825.9 846 51.8
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 6.0e-227 792.7 1786 32.3
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.7e-219 767.3 600 67.8
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 1.1e-217 761.9 512 75.2
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.7e-184 651.7 492 68.1
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.9e-180 638.3 453 72.2
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.7e-176 625.2 455 74.7
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.6e-174 618.6 729 47.9
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.4e-169 600.5 2031 27.0
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 7.2e-164 583.2 451 68.1
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 9.2e-151 539.7 347 79.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.0e-150 538.5 551 51.4
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 9.9e-137 493.0 314 77.4
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.2e-118 433.0 358 64.5
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 5.6e-108 397.5 874 33.2
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.1e-100 373.2 1709 22.8
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.0e-97 362.5 287 63.1
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 4.6e-94 351.3 277 63.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.8e-93 349.4 295 61.0
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-82 313.2 278 59.0
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.7e-78 298.1 161 89.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 6.1e-70 271.2 338 49.4
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 3.0e-69 268.9 346 42.8
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 4.4e-68 265.0 194 70.1
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.6e-60 239.2 206 56.8
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 5.7e-60 238.0 163 70.6
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 7.5e-52 211.1 147 71.4
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.3e-51 210.3 198 55.6
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 4.5e-49 201.8 177 63.8
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 2.9e-48 199.1 234 53.4
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 3.0e-45 189.1 339 39.5
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.6e-44 186.0 284 41.9
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 8.3e-43 181.0 129 69.8
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.9e-41 174.9 217 41.5
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.5e-39 169.5 173 56.6
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.4e-37 163.7 144 61.8
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 2.9e-35 156.0 174 48.3
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 1.1e-34 154.1 167 56.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.2e-33 150.6 141 56.7
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.3e-31 142.5 258 36.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.3e-29 136.3 168 50.0
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.9e-27 128.6 169 42.6
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.1e-25 123.2 88 68.2
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.1e-25 123.2 145 46.9
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 4.6e-25 122.1 77 80.5
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.5e-23 117.1 92 65.2
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 5.6e-23 115.2 157 44.6
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.6e-22 113.6 73 75.3
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-18 100.9 84 53.6
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 6.0e-17 95.1 72 68.1
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 5.1e-16 92.0 231 29.9
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 7.3e-15 88.2 113 46.0
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.4e-13 84.0 91 45.1
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 8.9e-13 81.3 145 35.9
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 8.9e-13 81.3 72 58.3
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 7.6e-12 78.2 60 65.0
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 9.9e-12 77.8 55 61.8
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.7e-08 67.0 78 52.6
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.3e-08 66.6 111 39.6
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.5e-07 63.2 48 60.4
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.3e-07 62.4 48 62.5
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.1e-06 58.2 38 73.7


User provided reference genes

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