Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 8.5e-111 403.7 202 100.0
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.6e-109 399.4 202 98.5
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 7.5e-91 337.4 201 83.1
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.1e-86 323.6 201 81.1
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-80 303.1 191 75.9
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 7.7e-80 300.8 188 77.1
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 3.8e-79 298.5 198 74.2
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 6.6e-79 297.7 183 79.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 8.6e-79 297.4 186 78.5
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.5e-78 296.6 184 78.8
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.9e-78 296.2 187 77.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.5e-78 295.8 199 73.4
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.5e-78 295.8 195 75.4
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.3e-78 295.4 188 79.3
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.6e-77 293.1 187 77.0
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.1e-77 292.7 183 79.2
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-77 292.7 184 77.7
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-77 292.7 184 77.7
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.1e-77 291.2 184 77.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 6.1e-77 291.2 184 77.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 2.3e-76 289.3 183 79.2
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.0e-76 288.9 184 78.3
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 4.0e-76 288.5 190 73.7
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 5.2e-76 288.1 187 76.5
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 6.8e-76 287.7 197 72.6
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 8.9e-76 287.3 186 72.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 2.0e-75 286.2 195 75.9
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 3.4e-75 285.4 188 76.6
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 4.4e-75 285.0 181 74.6
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 5.7e-75 284.6 186 75.8
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 9.8e-75 283.9 198 71.7
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.3e-74 283.5 186 74.2
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.9e-74 281.6 189 74.6
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.3e-74 280.8 184 75.5
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.3e-74 280.8 188 75.0
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.1e-73 280.4 189 73.5
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.1e-73 280.4 184 76.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.4e-73 280.0 190 72.6
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.8e-73 279.6 192 73.4
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 2.4e-73 279.3 189 73.0
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 5.4e-73 278.1 187 74.3
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.7e-72 275.8 187 73.3
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 7.8e-72 274.2 187 73.8
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 7.8e-72 274.2 196 70.4
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.0e-71 273.9 189 71.4
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.7e-71 273.1 170 80.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.3e-71 272.7 188 69.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 3.9e-71 271.9 187 70.6
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 3.9e-71 271.9 189 70.9
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 6.6e-71 271.2 170 80.0
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.1e-70 270.4 198 70.7
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.5e-70 270.0 197 68.5
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.9e-70 269.6 189 70.9
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.3e-70 268.9 188 69.1
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 3.3e-70 268.9 188 70.7
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 7.3e-70 267.7 197 68.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 7.3e-70 267.7 186 72.0
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 9.5e-70 267.3 195 68.2
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 9.5e-70 267.3 188 69.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-69 266.9 185 70.8
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.2e-69 266.9 185 70.8
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.6e-69 266.5 197 68.5
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.8e-69 265.8 193 68.9
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 3.6e-69 265.4 187 72.7
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.6e-69 265.4 187 71.7
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 6.1e-69 264.6 201 67.2
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.0e-68 263.8 189 70.4
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.8e-68 263.1 183 71.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.3e-68 262.7 185 69.2
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.0e-68 261.9 204 63.7
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 5.2e-68 261.5 165 74.5
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 8.9e-68 260.8 185 70.8
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.2e-67 260.4 170 74.7
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.5e-67 260.0 179 72.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.6e-67 259.2 189 72.0
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.9e-66 255.8 198 66.7
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.9e-66 255.8 182 69.2
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 4.9e-66 255.0 185 68.6
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 4.9e-66 255.0 185 68.6
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 4.9e-66 255.0 185 68.6
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 6.4e-66 254.6 185 68.6
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 6.4e-66 254.6 198 66.7
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-65 253.8 185 68.6
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.1e-65 253.8 169 73.4
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.4e-65 253.4 193 69.4
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.4e-65 252.7 189 68.8
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 4.1e-65 251.9 197 65.0
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 7.0e-65 251.1 185 68.6
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 9.2e-65 250.8 169 74.0
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.2e-64 250.4 179 70.9
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.0e-64 249.6 167 75.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.6e-64 248.4 193 68.4
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 3.0e-63 245.7 203 62.6
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.5e-62 242.7 171 69.6
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 3.6e-61 238.8 189 64.0
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 4.7e-61 238.4 196 61.2
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 1.4e-60 236.9 171 68.4
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 3.1e-60 235.7 189 64.0
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.7e-58 229.9 179 62.6
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-58 229.9 173 65.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.2e-58 229.6 185 63.8
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.4e-58 228.0 181 61.9
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 5.6e-54 214.9 165 66.1
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 5.2e-52 208.4 192 54.7
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.2e-51 207.2 196 56.1
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.5e-51 206.8 131 79.4
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 5.8e-51 204.9 123 78.0
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 8.3e-50 201.1 150 64.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.4e-49 200.3 122 81.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 4.1e-49 198.7 199 55.3
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.1e-49 198.0 123 79.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 6.6e-47 191.4 183 59.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.1e-46 190.7 185 56.2
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.5e-46 190.3 149 63.8
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 8.9e-44 181.0 178 55.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 5.8e-43 178.3 199 52.3
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 6.4e-42 174.9 146 58.2
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 6.4e-42 174.9 143 60.1
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 9.3e-41 171.0 149 59.1
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.8e-40 167.9 112 72.3
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.7e-34 150.2 130 51.5
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 5.4e-33 145.2 92 76.1
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.6e-32 143.7 84 83.3
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.7e-32 142.9 134 53.7
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.9e-31 139.0 185 44.9
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.9e-31 139.0 185 44.9
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.4e-28 130.6 152 44.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 2.9e-26 122.9 157 43.9
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 4.6e-24 115.5 183 38.8
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 2.8e-21 106.3 83 67.5
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.3e-18 97.4 61 75.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.2e-18 96.7 56 82.1
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.4e-17 94.0 114 40.4
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 3.2e-17 92.8 157 37.6
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 3.2e-17 92.8 157 37.6
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.2e-09 66.2 66 51.5


User provided reference genes

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