Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016028 Quercus lobata HOM05D005005 ORTHO05D006178 4.7e-50 200.7 88 100.0
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 7.1e-46 186.8 88 94.3
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.7e-29 131.7 81 71.6
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 4.3e-27 124.4 80 70.0
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 2.8e-26 121.7 83 63.9
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 6.2e-26 120.6 78 71.8
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 2.9e-23 111.7 81 56.8
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 7.1e-22 107.1 78 60.3
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.6e-21 105.9 83 54.2
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 3.5e-21 104.8 78 57.7
TAR636G3532 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.8e-20 102.4 70 60.0
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.5e-19 99.4 81 53.1
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 4.3e-19 97.8 79 55.7
Manes.04G156500 Manihot esculenta HOM05D005005 ORTHO05D006178 2.2e-18 95.5 82 53.7
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 3.7e-18 94.7 82 51.2
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 4.8e-18 94.4 77 53.2
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 8.2e-18 93.6 81 54.3
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 2.0e-16 89.0 76 52.6
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 2.6e-16 88.6 70 61.4
Potri.001G030900 Populus trichocarpa HOM05D005005 ORTHO05D006178 2.6e-16 88.6 82 50.0
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 4.5e-16 87.8 81 50.6
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 5.9e-16 87.4 82 50.0
Potri.003G194300 Populus trichocarpa HOM05D005005 ORTHO05D006178 5.9e-16 87.4 76 52.6
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.0e-15 86.7 71 53.5
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.0e-15 86.7 71 53.5
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 1.0e-15 86.7 71 53.5
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.0e-15 86.7 71 52.1
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 2.2e-15 85.5 76 51.3
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.2e-15 85.5 90 46.7
arahy.Tifrunner.gnm1.ann1.HP7LLE Arachis hypogaea HOM05D005005 ORTHO05D006178 2.9e-15 85.1 71 54.9
Lalb_Chr19g0132951 Lupinus albus HOM05D005005 ORTHO05D006178 2.9e-15 85.1 82 50.0
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 3.8e-15 84.7 82 46.3
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 3.8e-15 84.7 96 47.9
arahy.Tifrunner.gnm1.ann1.1L47SY Arachis hypogaea HOM05D005005 ORTHO05D006178 5.0e-15 84.3 71 53.5
CSS0003849 Camellia sinensis var. sinensis HOM05D005005 ORTHO05D006178 5.0e-15 84.3 82 50.0
Lalb_Chr03g0032191 Lupinus albus HOM05D005005 ORTHO05D006178 5.0e-15 84.3 82 50.0
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 5.0e-15 84.3 76 50.0
Ca_23977_v3 Cicer arietinum L. HOM05D005005 ORTHO05D006178 6.5e-15 84.0 71 52.1
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 6.5e-15 84.0 76 50.0
Glyma.13G192200 Glycine max HOM05D005005 ORTHO05D006178 6.5e-15 84.0 75 50.7
Lj3g0014782 Lotus japonicus HOM05D005005 ORTHO05D006178 6.5e-15 84.0 79 48.1
Cc09_g07690 Coffea canephora HOM05D005005 ORTHO05D006178 8.5e-15 83.6 82 48.8
Psat4g145120 Pisum sativum HOM05D005005 ORTHO05D006178 8.5e-15 83.6 86 48.8
Prupe.2G042700 Prunus persica HOM05D005005 ORTHO05D006178 8.5e-15 83.6 84 45.2
RcHm_v2.0_Chr1g0326491 Rosa chinensis HOM05D005005 ORTHO05D006178 8.5e-15 83.6 75 50.7
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 1.4e-14 82.8 78 48.7
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 1.9e-14 82.4 76 48.7
Glyma.15G230500 Glycine max HOM05D005005 ORTHO05D006178 1.9e-14 82.4 75 49.3
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 2.5e-14 82.0 55 63.6
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 3.2e-14 81.6 75 49.3
Sabra03G0145000 Salix brachista HOM05D005005 ORTHO05D006178 3.2e-14 81.6 46 71.7
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 3.2e-14 81.6 81 49.4
Cpa.g.sc169.39 Carica papaya HOM05D005005 ORTHO05D006178 4.2e-14 81.3 71 47.9
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 4.2e-14 81.3 82 47.6
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 4.2e-14 81.3 76 48.7
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 4.2e-14 81.3 76 48.7
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 4.2e-14 81.3 75 49.3
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 5.5e-14 80.9 76 47.4
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 5.5e-14 80.9 75 49.3
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 7.2e-14 80.5 75 49.3
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 7.2e-14 80.5 43 74.4
HanXRQChr01g0003701 Helianthus annuus HOM05D005005 ORTHO05D006178 9.4e-14 80.1 43 74.4
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 9.4e-14 80.1 45 73.3
QL04p021121 Quercus lobata HOM05D005005 ORTHO05D006178 9.4e-14 80.1 82 46.3
QL93p0049_0022 Quercus lobata HOM05D005005 ORTHO05D006178 9.4e-14 80.1 82 46.3
Rhsim07G0069000 Rhododendron simsii HOM05D005005 ORTHO05D006178 9.4e-14 80.1 86 47.7
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 1.2e-13 79.7 73 49.3
MSTRG.20501 Avicennia marina HOM05D005005 ORTHO05D006178 1.6e-13 79.3 46 69.6
ClCG08G010820 Citrullus lanatus HOM05D005005 ORTHO05D006178 1.6e-13 79.3 67 50.7
Nitab4.5_0002838g0130 Nicotiana tabacum HOM05D005005 ORTHO05D006178 1.6e-13 79.3 85 45.9
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 2.1e-13 79.0 46 71.7
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 2.1e-13 79.0 83 47.0
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.7e-13 78.6 76 46.1
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 2.7e-13 78.6 46 65.2
Lj7A493G34 Lonicera japonica HOM05D005005 ORTHO05D006178 2.7e-13 78.6 45 71.1
MD02G1278000 Malus domestica HOM05D005005 ORTHO05D006178 2.7e-13 78.6 76 48.7
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 2.7e-13 78.6 62 56.5
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 2.7e-13 78.6 44 72.7
Gohir.D06G184600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 3.6e-13 78.2 75 46.7
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 4.6e-13 77.8 55 61.8
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 4.6e-13 77.8 45 66.7
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 4.6e-13 77.8 55 54.5
SalBow5G3115 Salvia bowleyana HOM05D005005 ORTHO05D006178 6.1e-13 77.4 65 53.8
Actinidia06222 Actinidia chinensis HOM05D005005 ORTHO05D006178 7.9e-13 77.0 46 65.2
Actinidia07969 Actinidia chinensis HOM05D005005 ORTHO05D006178 7.9e-13 77.0 46 65.2
ECA248G3166 Erigeron canadensis HOM05D005005 ORTHO05D006178 7.9e-13 77.0 43 72.1
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 7.9e-13 77.0 43 72.1
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 7.9e-13 77.0 44 70.5
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 1.0e-12 76.6 70 51.4
Gorai.010G215900 Gossypium raimondii HOM05D005005 ORTHO05D006178 1.0e-12 76.6 75 45.3
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 1.0e-12 76.6 79 46.8
Peaxi162Scf00220g00417 Petunia axillaris HOM05D005005 ORTHO05D006178 1.4e-12 76.3 68 51.5
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 1.8e-12 75.9 67 50.7
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 2.3e-12 75.5 76 44.7
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 3.0e-12 75.1 68 50.0
Gohir.A06G174600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 5.1e-12 74.3 75 45.3
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 6.7e-12 73.9 73 46.6
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 6.7e-12 73.9 68 48.5
unitig_61.g26369 Utricularia gibba HOM05D005005 ORTHO05D006178 1.5e-11 72.8 46 63.0
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.0e-11 72.4 44 65.9
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.0e-11 72.4 44 65.9
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 4.3e-11 71.2 44 65.9
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 7.4e-11 70.5 81 42.0
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 7.4e-11 70.5 94 39.4
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 9.7e-11 70.1 45 62.2
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 1.7e-10 69.3 87 43.7
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 2.8e-10 68.6 67 46.3
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 3.7e-10 68.2 53 50.9
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 6.3e-10 67.4 81 43.2
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.8e-09 65.9 53 49.1
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 9.1e-09 63.5 44 59.1
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 9.1e-09 63.5 45 55.6
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.2e-08 63.2 63 41.3
TPR.G8528 Trifolium pratense HOM05D005005 ORTHO05D006178 1.2e-08 63.2 45 53.3
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.0e-08 62.4 46 54.3
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.0e-08 62.4 89 40.4
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 4.5e-08 61.2 45 48.9
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.0e-07 60.1 80 42.5
Nitab4.5_0004168g0100 Nicotiana tabacum HOM05D005005 ORTHO05D006178 1.3e-07 59.7 58 48.3
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 1.7e-07 59.3 47 57.4
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 2.9e-07 58.5 80 42.5
CDE04G0220 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.1e-06 56.6 50 44.0


User provided reference genes

Program Settings