Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 5.8e-311 1070.1 570 100.0
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 9.7e-245 850.1 571 78.5
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.0e-233 813.5 571 76.2
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 3.8e-233 811.6 566 74.7
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 2.1e-231 805.8 568 75.4
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.3e-229 798.5 565 74.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.7e-228 796.2 569 74.0
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.8e-228 795.4 564 75.2
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.8e-228 794.7 576 74.1
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.2e-228 793.9 576 74.0
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-227 792.7 571 76.0
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 3.1e-227 792.0 569 74.7
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.6e-226 789.6 572 74.5
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.0e-226 789.3 552 77.5
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.6e-226 788.9 573 74.3
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 5.0e-225 784.6 568 72.9
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 6.5e-225 784.3 571 74.3
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.5e-224 783.1 519 81.1
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 3.2e-224 781.9 571 74.1
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.2e-224 781.9 576 73.3
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.2e-224 781.9 565 72.4
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 3.2e-224 781.9 569 73.5
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.5e-224 781.2 571 74.3
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.8e-222 776.2 569 72.2
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.0e-222 775.4 565 72.0
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.7e-220 768.5 574 71.6
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-219 766.1 574 72.6
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 9.1e-219 763.8 570 71.8
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.7e-217 759.6 570 73.9
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.0e-214 750.4 574 69.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.8e-214 749.6 569 70.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.8e-214 747.7 565 71.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 2.6e-213 745.7 567 70.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.8e-212 742.3 567 70.2
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.8e-212 742.3 566 70.8
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 6.3e-212 741.1 569 71.4
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 8.3e-212 740.7 567 69.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 1.1e-211 740.3 605 68.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.7e-210 735.7 497 75.7
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 3.5e-210 735.3 571 69.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.5e-210 735.3 567 70.2
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.9e-209 732.3 569 69.6
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 4.2e-208 728.4 568 68.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 5.5e-208 728.0 585 69.6
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 8.0e-207 724.2 567 69.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 8.0e-207 724.2 572 68.0
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.0e-206 723.8 569 67.7
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 6.8e-206 721.1 571 68.0
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 2.6e-205 719.2 572 68.4
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 7.5e-205 717.6 569 67.1
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.3e-204 716.8 514 74.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.7e-204 716.5 569 67.1
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.1e-203 711.8 572 67.8
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 9.2e-203 710.7 566 69.4
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.2e-202 710.3 563 67.1
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 2.7e-202 709.1 568 68.8
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.5e-202 708.4 565 67.1
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 4.5e-202 708.4 563 67.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 4.5e-202 708.4 563 67.1
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 5.9e-202 708.0 565 69.6
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.0e-201 707.2 567 66.3
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.0e-201 707.2 565 66.9
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.7e-201 706.4 566 66.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.3e-201 706.1 568 68.1
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 5.0e-201 704.9 565 66.9
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 8.6e-201 704.1 573 65.8
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 2.5e-200 702.6 567 65.6
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.3e-200 702.2 572 66.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.3e-200 702.2 566 65.7
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.6e-200 701.4 566 65.9
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.8e-198 696.4 570 65.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.8e-198 696.4 575 66.1
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 2.3e-198 696.0 566 69.1
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.3e-198 696.0 575 65.9
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.0e-197 693.0 592 63.3
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 4.4e-197 691.8 571 64.6
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 9.8e-197 690.6 585 63.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 5.9e-194 681.4 573 64.6
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.3e-193 679.5 597 64.8
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 6.6e-193 677.9 589 64.0
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.5e-192 676.8 566 64.5
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 3.6e-191 672.2 567 64.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 5.4e-187 658.3 565 63.9
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 5.4e-187 658.3 476 73.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 3.0e-185 652.5 607 60.5
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.5e-184 649.4 586 63.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 4.3e-184 648.7 479 71.4
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 5.6e-184 648.3 461 72.5
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 9.5e-184 647.5 573 63.9
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 4.0e-182 642.1 572 62.8
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 3.4e-181 639.0 648 59.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.3e-180 634.4 572 61.9
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.3e-177 627.1 507 66.1
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.3e-177 626.3 504 68.7
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 7.3e-176 621.3 584 60.4
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.1e-170 603.2 569 60.3
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 7.8e-170 601.3 502 64.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.3e-169 599.7 487 67.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.5e-168 597.0 555 61.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 3.3e-160 569.3 570 59.1
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.8e-156 555.8 569 54.1
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.3e-153 546.6 572 57.3
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.2e-151 538.5 348 78.7
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.1e-150 537.7 544 54.6
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 5.8e-149 531.9 511 55.6
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.9e-148 529.6 589 55.0
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.1e-147 527.7 347 76.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 6.9e-142 508.4 479 59.7
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.1e-136 491.1 339 73.7
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 7.4e-136 488.4 402 66.2
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.8e-127 459.9 527 52.9
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.1e-122 443.7 489 52.4
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.6e-122 443.0 366 65.0
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 3.8e-116 422.9 419 59.7
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.5e-116 422.2 242 89.3
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 7.9e-114 415.2 241 85.9
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 7.9e-114 415.2 241 85.9
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 6.3e-111 405.6 397 58.4
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.8e-105 387.5 305 65.6
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 7.5e-104 382.1 423 53.9
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 6.3e-103 379.0 234 80.3
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 2.9e-100 370.2 399 56.6
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.6e-98 364.4 278 66.9
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 6.8e-97 359.0 418 53.8
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.7e-95 354.4 191 92.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-90 337.8 335 57.3
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 9.8e-88 328.6 381 53.5
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 6.1e-82 309.3 574 37.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.8e-78 297.7 158 90.5
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.7e-76 291.2 578 36.0
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.1e-70 271.9 461 41.2
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 1.1e-62 245.4 142 84.5
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-61 240.7 142 86.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.6e-60 236.1 142 84.5
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.5e-59 235.0 179 69.8
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 6.2e-58 229.6 133 87.2
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.8e-56 223.0 127 88.2
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-52 211.5 554 30.9
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.5e-51 208.4 239 53.6
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.6e-42 178.3 501 29.7
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-37 162.2 165 57.0
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-35 154.5 88 87.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-32 145.2 92 79.3
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.2e-30 137.5 122 61.5
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.4e-25 122.1 170 47.1
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.8e-25 121.7 208 42.8
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.1e-22 112.5 417 29.3
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.6e-21 108.6 131 48.9
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.5e-19 101.3 210 31.9
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 2.8e-18 97.8 257 29.6
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-17 94.7 52 88.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-16 91.7 91 65.9
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.2e-15 88.2 45 91.1
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 8.2e-10 69.7 313 27.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.9e-06 58.5 199 27.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 2.5e-06 58.2 32 93.8


User provided reference genes

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