Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.2e-62 243.0 126 100.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 6.1e-59 230.7 126 91.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 6.8e-58 227.3 126 89.7
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 4.4e-57 224.6 126 89.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.2e-56 222.2 126 86.5
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 6.4e-56 220.7 126 88.9
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.4e-56 220.7 125 85.6
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 8.3e-56 220.3 126 88.9
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.4e-55 219.5 126 88.9
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.8e-55 219.2 126 88.1
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.8e-55 219.2 126 84.1
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.8e-55 219.2 127 87.4
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.2e-55 218.4 126 88.1
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.4e-55 217.6 126 84.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.4e-55 217.6 126 84.1
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 5.4e-55 217.6 126 86.5
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 7.0e-55 217.2 126 84.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 7.0e-55 217.2 126 82.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.2e-55 216.9 124 87.9
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.2e-54 216.5 121 90.1
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.0e-54 215.7 126 82.5
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.7e-54 215.3 126 84.1
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 4.6e-54 214.5 120 87.5
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 7.8e-54 213.8 125 85.6
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 7.8e-54 213.8 119 88.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.0e-53 213.4 126 82.5
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.0e-53 213.4 125 82.4
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.7e-53 212.6 118 89.0
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.9e-53 211.8 125 84.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 3.9e-53 211.5 118 87.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.9e-53 211.5 123 87.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 3.9e-53 211.5 119 88.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.0e-53 211.1 118 87.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.0e-53 211.1 125 80.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 8.6e-53 210.3 121 85.1
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.6e-53 210.3 126 81.0
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-52 209.9 125 82.4
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-52 209.9 123 84.6
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-52 209.9 126 80.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.5e-52 209.5 125 84.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-52 209.5 126 80.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.5e-52 208.8 126 82.5
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 5.6e-52 207.6 120 85.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 7.3e-52 207.2 124 82.3
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 7.3e-52 207.2 126 81.7
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 9.5e-52 206.8 123 83.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.2e-51 206.5 126 82.5
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.6e-51 206.1 119 84.0
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.1e-51 205.7 124 81.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.6e-51 204.9 120 83.3
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.6e-51 204.9 124 79.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.6e-51 204.9 126 78.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.6e-51 204.9 120 84.2
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.7e-51 204.5 126 81.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.2e-51 204.1 126 78.6
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.0e-50 203.4 123 82.1
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-50 203.4 127 79.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-50 203.4 123 82.1
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.0e-50 203.4 123 82.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.0e-50 203.4 127 79.5
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.4e-50 203.0 122 81.1
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.8e-50 202.6 123 78.0
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.3e-50 202.2 123 82.1
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 3.1e-50 201.8 116 85.3
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 6.8e-50 200.7 116 84.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 8.9e-50 200.3 123 80.5
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.5e-49 199.5 120 80.0
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.5e-49 199.5 126 81.0
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.0e-49 199.1 126 80.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 9.8e-49 196.8 126 79.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 9.8e-49 196.8 114 84.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-48 196.4 126 78.6
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.3e-48 196.4 118 78.8
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.3e-48 196.4 118 78.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 127 76.4
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 126 78.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.7e-48 194.9 127 75.6
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.7e-48 194.9 127 75.6
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.7e-48 194.9 123 75.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 8.3e-48 193.7 123 78.9
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 8.3e-48 193.7 110 86.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.1e-47 193.4 124 79.0
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.9e-47 192.6 110 85.5
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.9e-47 192.6 124 76.6
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.4e-47 192.2 120 78.3
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 3.2e-47 191.8 123 75.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 3.2e-47 191.8 126 74.6
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.1e-47 191.4 120 75.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 5.4e-47 191.0 120 75.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 7.0e-47 190.7 127 74.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.0e-47 190.7 122 77.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 9.2e-47 190.3 117 78.6
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.2e-46 189.9 123 77.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.6e-46 189.5 105 87.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.6e-46 189.5 123 73.2
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.5e-46 188.3 120 74.2
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.5e-46 188.3 126 75.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 7.8e-46 187.2 117 78.6
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.3e-45 186.4 108 85.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.3e-45 185.7 110 80.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.8e-43 178.7 121 72.7
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.6e-43 178.3 120 75.0
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.3e-42 175.6 118 75.4
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 8.9e-42 173.7 123 66.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.5e-41 172.9 98 86.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 2.0e-41 172.6 122 69.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.6e-41 172.2 104 77.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.6e-41 172.2 120 73.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 5.8e-41 171.0 98 84.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.8e-41 171.0 98 87.8
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 9.8e-41 170.2 99 85.9
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.2e-40 169.1 119 71.4
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.4e-39 166.4 119 70.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.9e-39 166.0 120 69.2
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.1e-39 164.9 102 77.5
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-38 163.3 90 85.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-38 163.3 124 70.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 8.6e-37 157.1 120 65.8
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.9e-36 156.0 120 67.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.5e-36 155.6 95 80.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.5e-36 155.6 129 64.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 7.3e-36 154.1 123 65.9
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 9.5e-36 153.7 108 69.4
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 3.6e-35 151.8 83 88.0
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.2e-34 147.9 86 83.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 2.0e-33 146.0 85 80.0
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.4e-33 145.2 109 67.0
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.6e-33 144.1 126 65.1
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-32 142.9 97 72.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 5.4e-31 137.9 86 74.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 9.2e-31 137.1 121 54.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.7e-30 135.6 102 68.6
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 5.1e-29 131.3 88 70.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 8.6e-29 130.6 107 59.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.3e-28 128.6 121 51.2
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-28 128.6 113 54.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.2e-27 126.7 116 58.6
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.2e-27 126.7 114 53.5
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.1e-27 125.9 118 52.5
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 8.1e-27 124.0 85 74.1
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 8.1e-27 124.0 114 51.8
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.4e-26 123.2 126 56.3
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.4e-26 122.5 118 55.9
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 3.1e-26 122.1 114 51.8
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 6.8e-26 120.9 123 51.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.8e-25 117.9 109 54.1
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 7.6e-25 117.5 115 53.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 5.4e-23 111.3 132 47.7
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 6.0e-22 107.8 76 77.6
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 7.8e-22 107.5 129 45.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.0e-21 105.5 62 75.8
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 5.6e-20 101.3 61 80.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.5e-09 66.6 54 51.9
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.6e-09 64.3 35 80.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 9.9e-09 63.9 75 46.7
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 3.2e-07 58.9 111 36.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 9.3e-07 57.4 111 35.1
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 33.3
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 33.3
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 34.2
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 34.2
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 34.2
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 3.5e-06 55.5 111 34.2
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 4.6e-06 55.1 111 33.3
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 6.0e-06 54.7 111 32.4
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 6.0e-06 54.7 111 32.4


User provided reference genes

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