Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p015675 Quercus lobata HOM05D004827 ORTHO05D005395 8.5e-58 226.9 121 100.0
Haze_23732 Corylus avellana HOM05D004827 ORTHO05D005395 7.0e-28 127.5 109 68.8
GSVIVG01031499001 Vitis vinifera HOM05D004827 ORTHO05D005395 1.4e-23 113.2 111 63.1
Manes.04G014900 Manihot esculenta HOM05D004827 ORTHO05D005395 4.0e-23 111.7 108 61.1
CsaV3_1G013530 Cucumis sativus L. HOM05D004827 ORTHO05D005395 5.2e-23 111.3 113 61.1
Cfa010307 Carpinus fangiana HOM05D004827 ORTHO05D005395 8.9e-23 110.5 60 88.3
Phvul.011G084400 Phaseolus vulgaris HOM05D004827 ORTHO05D005395 1.5e-22 109.8 105 61.9
Sabra09G0004200 Salix brachista HOM05D004827 ORTHO05D005395 1.5e-22 109.8 106 58.5
TAR633G0460 Trochodendron aralioides HOM05D004827 ORTHO05D005395 2.0e-22 109.4 111 59.5
Potri.009G007200 Populus trichocarpa HOM05D004827 ORTHO05D005395 2.6e-22 109.0 107 59.8
Thecc.09G349000 Theobroma cacao HOM05D004827 ORTHO05D005395 5.8e-22 107.8 110 60.9
ClCG03G002770 Citrullus lanatus HOM05D004827 ORTHO05D005395 2.2e-21 105.9 111 55.9
Nn6g35282 Nelumbo nucifera HOM05D004827 ORTHO05D005395 2.2e-21 105.9 62 82.3
Lj3g0013572 Lotus japonicus HOM05D004827 ORTHO05D005395 4.9e-21 104.8 110 56.4
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea HOM05D004827 ORTHO05D005395 8.3e-21 104.0 79 70.9
Lj2A1013G28 Lonicera japonica HOM05D004827 ORTHO05D005395 8.3e-21 104.0 108 58.3
Ciclev10029169m.g Citrus clementina HOM05D004827 ORTHO05D005395 1.1e-20 103.6 115 59.1
EL10Ac9g22587 Beta vulgaris HOM05D004827 ORTHO05D005395 2.4e-20 102.4 100 58.0
Glyma.12G079700 Glycine max HOM05D004827 ORTHO05D005395 2.4e-20 102.4 97 59.8
arahy.Tifrunner.gnm1.ann1.4ZYX81 Arachis hypogaea HOM05D004827 ORTHO05D005395 3.2e-20 102.1 79 69.6
Sed0007609 Sechium edule HOM05D004827 ORTHO05D005395 3.2e-20 102.1 107 57.9
Duzib150G1276 Durio zibethinus HOM05D004827 ORTHO05D005395 4.1e-20 101.7 76 68.4
Medtr4g057685 Medicago truncatula HOM05D004827 ORTHO05D005395 7.0e-20 100.9 74 74.3
THA.LOC104808316 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 7.0e-20 100.9 111 55.0
PGSC0003DMG400008074 Solanum tuberosum HOM05D004827 ORTHO05D005395 9.2e-20 100.5 96 58.3
Sopen11g027750 Solanum pennellii HOM05D004827 ORTHO05D005395 1.2e-19 100.1 96 58.3
Actinidia24133 Actinidia chinensis HOM05D004827 ORTHO05D005395 1.6e-19 99.8 106 56.6
vmacro03268 Vaccinium macrocarpon HOM05D004827 ORTHO05D005395 2.0e-19 99.4 106 57.5
CANSAT78G0379 Cannabis sativa HOM05D004827 ORTHO05D005395 2.7e-19 99.0 108 63.0
FAN21G3549 Fragaria x ananassa HOM05D004827 ORTHO05D005395 4.6e-19 98.2 106 57.5
Dinv34726 Davidia involucrata HOM05D004827 ORTHO05D005395 6.0e-19 97.8 107 56.1
Rhsim13G0099200 Rhododendron simsii HOM05D004827 ORTHO05D005395 6.0e-19 97.8 110 55.5
Gohir.D13G238300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 7.8e-19 97.4 110 54.5
Gorai.013G269200 Gossypium raimondii HOM05D004827 ORTHO05D005395 7.8e-19 97.4 110 54.5
CiPaw.13G119600 Carya illinoinensis HOM05D004827 ORTHO05D005395 1.0e-18 97.1 52 90.4
CDE06G2782 Ceratophyllum demersum HOM05D004827 ORTHO05D005395 1.0e-18 97.1 68 72.1
COL.COLO4_11061 Corchorus olitorius HOM05D004827 ORTHO05D005395 1.3e-18 96.7 111 56.8
Thhalv10008645m.g Eutrema salsugineum HOM05D004827 ORTHO05D005395 1.3e-18 96.7 113 53.1
Prupe.6G109100 Prunus persica HOM05D004827 ORTHO05D005395 1.3e-18 96.7 52 90.4
CSS0005897 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 1.7e-18 96.3 108 56.5
Psat0s3927g0040 Pisum sativum HOM05D004827 ORTHO05D005395 1.7e-18 96.3 106 57.5
Atru.chr3.3541 Acer truncatum HOM05D004827 ORTHO05D005395 2.3e-18 95.9 52 90.4
BcaC05g24729 Brassica carinata HOM05D004827 ORTHO05D005395 3.0e-18 95.5 109 55.0
CSS0040325 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 3.0e-18 95.5 107 56.1
FAN11G0101 Fragaria x ananassa HOM05D004827 ORTHO05D005395 3.0e-18 95.5 100 61.0
Sp1g06750 Schrenkiella parvula HOM05D004827 ORTHO05D005395 3.0e-18 95.5 113 52.2
CSS0024800 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 3.9e-18 95.1 110 56.4
BolC5t29377H Brassica oleracea HOM05D004827 ORTHO05D005395 5.0e-18 94.7 109 54.1
MD11G1146100 Malus domestica HOM05D004827 ORTHO05D005395 5.0e-18 94.7 52 88.5
MBI12_g32344_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 6.6e-18 94.4 106 56.6
Nitab4.5_0001442g0020 Nicotiana tabacum HOM05D004827 ORTHO05D005395 6.6e-18 94.4 106 53.8
RcHm_v2.0_Chr5g0057511 Rosa chinensis HOM05D004827 ORTHO05D005395 6.6e-18 94.4 107 58.9
TPR.G6148 Trifolium pratense HOM05D004827 ORTHO05D005395 6.6e-18 94.4 106 56.6
Ah.01g003210 Amaranthus hybridus HOM05D004827 ORTHO05D005395 8.6e-18 94.0 100 58.0
Sc15g0001580 Simmondsia chinensis HOM05D004827 ORTHO05D005395 8.6e-18 94.0 52 86.5
VMungo1127G2270 Vigna mungo HOM05D004827 ORTHO05D005395 8.6e-18 94.0 52 86.5
Aqoxy1G01146 Aquilegia oxysepala HOM05D004827 ORTHO05D005395 1.1e-17 93.6 77 67.5
BcaB07g34053 Brassica carinata HOM05D004827 ORTHO05D005395 1.1e-17 93.6 59 76.3
Carub.0001s0746 Capsella rubella HOM05D004827 ORTHO05D005395 1.5e-17 93.2 113 52.2
MELO3C004950.2 Cucumis melo HOM05D004827 ORTHO05D005395 1.9e-17 92.8 52 86.5
A06p05180 Brassica napus HOM05D004827 ORTHO05D005395 2.5e-17 92.4 113 50.4
C05p06230 Brassica napus HOM05D004827 ORTHO05D005395 2.5e-17 92.4 109 53.2
MD00G1032700 Malus domestica HOM05D004827 ORTHO05D005395 2.5e-17 92.4 52 84.6
PGR102G0165 Punica granatum HOM05D004827 ORTHO05D005395 2.5e-17 92.4 52 86.5
AL1G18470 Arabidopsis lyrata HOM05D004827 ORTHO05D005395 3.3e-17 92.0 59 76.3
BraA06t23724Z Brassica rapa HOM05D004827 ORTHO05D005395 3.3e-17 92.0 113 50.4
CAN.G546.14 Capsicum annuum HOM05D004827 ORTHO05D005395 4.3e-17 91.7 109 53.2
Nitab4.5_0004993g0010 Nicotiana tabacum HOM05D004827 ORTHO05D005395 4.3e-17 91.7 105 49.5
PSO063G0803 Papaver somniferum HOM05D004827 ORTHO05D005395 5.6e-17 91.3 52 82.7
Solyc11g069040.3 Solanum lycopersicum HOM05D004827 ORTHO05D005395 5.6e-17 91.3 52 80.8
Aa31sc241G20 Aethionema arabicum HOM05D004827 ORTHO05D005395 7.3e-17 90.9 69 68.1
AT1G08110 Arabidopsis thaliana HOM05D004827 ORTHO05D005395 7.3e-17 90.9 52 84.6
CARHR007920 Cardamine hirsuta HOM05D004827 ORTHO05D005395 7.3e-17 90.9 59 74.6
Glyma.11G194300 Glycine max HOM05D004827 ORTHO05D005395 9.5e-17 90.5 52 82.7
Ca_19304_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 1.2e-16 90.1 51 86.3
Ca_19305_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 1.2e-16 90.1 51 86.3
FAN25G1724 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.2e-16 90.1 107 57.9
SEGI_26473 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 1.6e-16 89.7 55 76.4
Ah.01g003220 Amaranthus hybridus HOM05D004827 ORTHO05D005395 2.1e-16 89.4 50 84.0
AUR62014938 Chenopodium quinoa HOM05D004827 ORTHO05D005395 4.7e-16 88.2 116 50.9
Lalb_Chr03g0027631 Lupinus albus HOM05D004827 ORTHO05D005395 4.7e-16 88.2 75 62.7
Hund01469 Selenicereus undatus HOM05D004827 ORTHO05D005395 6.2e-16 87.8 85 63.5
AUR62029203 Chenopodium quinoa HOM05D004827 ORTHO05D005395 8.1e-16 87.4 92 55.4
Gohir.A13G232600 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.1e-15 87.0 51 82.4
PSO339G5318 Papaver somniferum HOM05D004827 ORTHO05D005395 1.4e-15 86.7 52 78.8
Cpa.g.sc65.38 Carica papaya HOM05D004827 ORTHO05D005395 3.1e-15 85.5 52 80.8
SEGI_34492 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 3.1e-15 85.5 110 50.9
ATR0219G018 Amborella trichopoda HOM05D004827 ORTHO05D005395 5.2e-15 84.7 62 69.4
Duzib170G0342 Durio zibethinus HOM05D004827 ORTHO05D005395 5.2e-15 84.7 51 78.4
SGA_v2.0_scaffold116G32194 Striga asiatica HOM05D004827 ORTHO05D005395 6.8e-15 84.3 109 46.8
Lsat_1_v5_gn_1_62721 Lactuca sativa HOM05D004827 ORTHO05D005395 1.2e-14 83.6 86 59.3
Mapoly0033s0083 Marchantia polymorpha HOM05D004827 ORTHO05D005395 2.0e-14 82.8 52 75.0
Mapoly0033s0085 Marchantia polymorpha HOM05D004827 ORTHO05D005395 2.0e-14 82.8 52 75.0
unitig_736.g22404 Utricularia gibba HOM05D004827 ORTHO05D005395 2.0e-14 82.8 112 49.1
Zm00001eb086540 Zea mays HOM05D004827 ORTHO05D005395 2.6e-14 82.4 67 64.2
Gohir.D03G138300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 3.4e-14 82.0 49 77.6
Gorai.003G145000 Gossypium raimondii HOM05D004827 ORTHO05D005395 3.4e-14 82.0 49 77.6
Gohir.A03G030000 Gossypium hirsutum HOM05D004827 ORTHO05D005395 4.4e-14 81.6 53 77.4
SGA_v2.0_scaffold263G45967 Striga asiatica HOM05D004827 ORTHO05D005395 4.4e-14 81.6 48 77.1
Gohir.A03G030200 Gossypium hirsutum HOM05D004827 ORTHO05D005395 5.8e-14 81.3 49 77.6
Os05g0295800 Oryza sativa ssp. japonica HOM05D004827 ORTHO05D005395 5.8e-14 81.3 55 74.5
Migut.D02265 Erythranthe guttata HOM05D004827 ORTHO05D005395 7.5e-14 80.9 70 60.0
SalBow3G2012 Salvia bowleyana HOM05D004827 ORTHO05D005395 1.3e-13 80.1 48 79.2
FvH4_3g30960 Fragaria vesca HOM05D004827 ORTHO05D005395 1.7e-13 79.7 51 76.5
Gohir.A03G030100 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.7e-13 79.7 53 75.5
Gohir.D03G138500 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.7e-13 79.7 53 75.5
Gorai.003G145200 Gossypium raimondii HOM05D004827 ORTHO05D005395 1.7e-13 79.7 53 75.5
THA.LOC104800584 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 1.7e-13 79.7 103 49.5
FAN16G1413 Fragaria x ananassa HOM05D004827 ORTHO05D005395 2.2e-13 79.3 51 74.5
Gohir.D03G138400 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.2e-13 79.3 52 76.9
Gorai.003G145100 Gossypium raimondii HOM05D004827 ORTHO05D005395 2.2e-13 79.3 52 76.9
SMO353G0047 Selaginella moellendorffii HOM05D004827 ORTHO05D005395 2.9e-13 79.0 48 77.1
TWI38G0398 Tripterygium wilfordii HOM05D004827 ORTHO05D005395 2.9e-13 79.0 48 77.1
ECA248G1504 Erigeron canadensis HOM05D004827 ORTHO05D005395 6.4e-13 77.8 110 45.5
Cc01_g10500 Coffea canephora HOM05D004827 ORTHO05D005395 1.9e-12 76.3 112 44.6
HanXRQChr11g0346211 Helianthus annuus HOM05D004827 ORTHO05D005395 1.9e-12 76.3 110 50.9
HPP92_002675 Vanilla planifolia HOM05D004827 ORTHO05D005395 1.9e-12 76.3 80 55.0
MSTRG.21095 Avicennia marina HOM05D004827 ORTHO05D005395 2.4e-12 75.9 48 72.9
CBR_g8002 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-12 75.9 51 70.6
Oeu018368.2 Olea europaea HOM05D004827 ORTHO05D005395 4.1e-12 75.1 54 64.8
HPP92_002620 Vanilla planifolia HOM05D004827 ORTHO05D005395 5.4e-12 74.7 51 68.6
MSTRG.17890 Avicennia marina HOM05D004827 ORTHO05D005395 9.2e-12 73.9 72 54.2
Pp3c10_11200 Physcomitrium patens HOM05D004827 ORTHO05D005395 1.6e-11 73.2 54 66.7
HanXRQChr01g0019511 Helianthus annuus HOM05D004827 ORTHO05D005395 6.0e-11 71.2 47 76.6
MBI18_g02639_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 6.0e-11 71.2 79 49.4
Gohir.D03G138550 Gossypium hirsutum HOM05D004827 ORTHO05D005395 3.0e-10 68.9 58 60.3
Gorai.003G145300 Gossypium raimondii HOM05D004827 ORTHO05D005395 3.0e-10 68.9 58 60.3
SGA_v2.0_scaffold180G39601 Striga asiatica HOM05D004827 ORTHO05D005395 8.6e-10 67.4 62 58.1
BcaB07g34056 Brassica carinata HOM05D004827 ORTHO05D005395 1.5e-09 66.6 64 59.4
Peaxi162Scf00682g00012 Petunia axillaris HOM05D004827 ORTHO05D005395 3.1e-07 58.9 50 58.0
ECA248G0211 Erigeron canadensis HOM05D004827 ORTHO05D005395 1.2e-06 57.0 93 41.9
Pp3c1_34670 Physcomitrium patens HOM05D004827 ORTHO05D005395 1.5e-06 56.6 50 62.0


User provided reference genes

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