Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.9e-45 184.9 95 100.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 6.7e-26 120.6 91 67.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.5e-25 119.4 96 64.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 4.4e-25 117.9 95 61.1
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-23 111.7 97 61.9
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.7e-22 108.6 94 60.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.9e-22 107.5 96 56.2
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.0e-21 104.4 95 53.7
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.5e-21 104.0 96 60.4
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-20 103.2 95 52.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.5e-20 102.1 95 52.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.2e-20 101.3 95 51.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.2e-20 101.3 95 51.6
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 7.2e-20 100.5 95 53.7
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.2e-20 100.5 95 55.8
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.4e-20 100.1 95 49.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 9.4e-20 100.1 95 54.7
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-19 99.8 95 52.6
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-19 99.8 95 51.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.7e-19 98.6 96 59.4
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.7e-19 98.6 96 55.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.7e-19 98.6 95 55.8
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.1e-19 97.4 94 54.3
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.1e-19 97.4 94 54.3
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-18 96.3 96 50.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.4e-18 96.3 96 56.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-18 95.9 95 55.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.3e-18 95.5 96 56.2
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.3e-18 95.5 95 54.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.0e-18 95.1 95 51.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.5e-17 92.8 95 51.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.0e-17 92.4 95 51.6
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.6e-17 92.0 95 47.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.7e-17 90.9 96 51.0
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.5e-17 90.5 95 50.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.8e-17 90.1 95 51.6
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-16 89.7 95 47.4
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.3e-16 89.7 95 53.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.7e-16 89.4 96 51.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.2e-16 89.0 98 54.1
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.7e-16 88.2 95 50.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.8e-16 87.8 95 48.4
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 6.3e-16 87.4 97 50.5
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 52.1
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.4e-15 85.5 95 49.5
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.4e-15 84.3 66 60.6
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.0e-15 84.0 97 51.5
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.5e-14 81.6 96 49.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.5e-14 81.6 97 47.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.5e-14 81.3 86 50.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 4.5e-14 81.3 90 48.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.7e-14 80.5 90 47.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 7.7e-14 80.5 90 48.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.7e-13 79.3 99 47.5
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.7e-13 79.3 87 50.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.9e-13 78.6 85 52.9
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.8e-13 78.2 86 48.8
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 5.0e-13 77.8 97 49.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 6.5e-13 77.4 62 56.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 8.6e-13 77.0 80 56.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.6e-13 77.0 81 49.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.1e-12 76.6 86 50.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.9e-12 75.9 96 45.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.2e-12 75.1 95 43.2
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 3.2e-12 75.1 86 50.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 3.2e-12 75.1 86 50.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.2e-12 75.1 97 45.4
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 3.2e-12 75.1 93 43.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 5.5e-12 74.3 87 50.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 7.2e-12 73.9 95 45.3
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.2e-12 73.9 88 48.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 7.2e-12 73.9 87 47.1
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 7.2e-12 73.9 97 50.5
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 9.5e-12 73.6 96 44.8
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 9.5e-12 73.6 52 65.4
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.2e-11 73.2 101 48.5
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.6e-11 72.8 97 47.4
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.1e-11 72.4 95 42.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.1e-11 72.4 92 45.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.8e-11 72.0 94 43.6
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.8e-11 72.0 94 43.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 97 43.3
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 93 45.2
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.8e-11 72.0 86 45.3
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.6e-11 71.6 97 41.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.6e-11 71.6 97 41.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.6e-11 71.6 94 42.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.1e-11 70.9 85 47.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.0e-10 70.1 88 46.6
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.0e-10 70.1 90 45.6
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.0e-10 70.1 101 37.6
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.4e-10 69.7 100 40.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.4e-10 69.7 85 50.6
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.4e-10 69.7 95 44.2
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.4e-10 69.7 88 44.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-10 69.3 87 47.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 93 44.1
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.3e-10 68.9 104 42.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.3e-10 68.9 94 42.6
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.3e-10 68.9 88 44.3
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.0e-10 68.6 64 54.7
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.0e-10 68.2 95 42.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.2e-10 67.8 62 53.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 6.8e-10 67.4 95 44.2
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 6.8e-10 67.4 96 43.8
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.8e-10 67.4 63 52.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 8.8e-10 67.0 42 69.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.2e-09 66.6 97 41.2
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.5e-09 66.2 97 41.2
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 87 46.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.0e-09 65.9 89 43.8
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 88 47.7
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-09 65.9 98 42.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.4e-09 65.1 84 44.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.4e-09 65.1 86 41.9
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-09 64.7 98 39.8
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.4e-09 64.7 90 43.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 5.7e-09 64.3 89 41.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 5.7e-09 64.3 90 40.0
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 7.5e-09 63.9 38 68.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 7.5e-09 63.9 86 40.7
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 7.5e-09 63.9 95 41.1
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 9.8e-09 63.5 89 46.1
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.8e-09 63.5 42 64.3
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 9.8e-09 63.5 81 48.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.8e-09 63.5 89 47.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.3e-08 63.2 94 42.6
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 86 44.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.3e-08 63.2 92 44.6
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.7e-08 62.8 91 42.9
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.7e-08 62.8 97 40.2
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.2e-08 62.4 87 41.4
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-08 62.4 52 57.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-08 62.4 52 57.7
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.2e-08 62.4 48 58.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.2e-08 62.4 62 48.4
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.9e-08 61.2 35 71.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 84 41.7
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.3e-08 60.8 91 38.5
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-07 60.1 52 55.8
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 52 55.8
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-07 60.1 88 40.9
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.1e-07 60.1 46 56.5
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 94 35.1
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 62 46.8
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 96 36.5
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 87 40.2
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.4e-07 58.9 41 63.4
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 3.1e-07 58.5 35 74.3
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 3.1e-07 58.5 95 36.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 3.1e-07 58.5 60 46.7
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.4e-07 57.8 95 36.8
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 7.0e-07 57.4 87 40.2
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-07 57.4 92 43.5
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-07 57.4 92 43.5
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 7.0e-07 57.4 95 35.8
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 7.0e-07 57.4 95 35.8
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 7.0e-07 57.4 48 58.3
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 9.2e-07 57.0 95 35.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 9.2e-07 57.0 95 35.8
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.2e-07 57.0 92 43.5
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 82 40.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.6e-06 56.2 83 42.2
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 91 41.8
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.5e-06 55.1 47 51.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.5e-06 55.1 46 52.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.5e-06 54.7 86 37.2
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.9e-06 54.3 99 36.4
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.9e-06 54.3 37 59.5
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 5.9e-06 54.3 89 39.3
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 5.9e-06 54.3 45 62.2
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.9e-06 54.3 39 61.5
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 7.8e-06 53.9 46 54.3
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.8e-06 53.9 84 42.9


User provided reference genes

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