Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 1.1e-127 459.9 220 100.0
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 2.1e-99 365.9 218 79.4
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 7.9e-86 320.9 188 79.8
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 2.8e-83 312.4 222 73.0
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 1.6e-78 296.6 215 64.2
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 6.0e-78 294.7 217 64.1
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 4.3e-76 288.5 218 63.3
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 4.8e-75 285.0 218 63.8
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 3.1e-74 282.3 220 63.6
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 6.9e-74 281.2 214 62.1
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 1.2e-73 280.4 219 60.7
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 8.5e-72 274.2 214 61.7
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.1e-71 273.9 213 61.5
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 5.5e-71 271.6 219 60.3
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 6.1e-70 268.1 199 63.3
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 1.0e-69 267.3 213 61.0
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 5.1e-69 265.0 218 61.0
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.5e-68 263.5 213 60.1
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 1.1e-63 247.3 218 55.0
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 3.6e-62 242.3 210 55.2
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 6.7e-61 238.0 217 59.0
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 3.3e-60 235.7 216 56.0
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 6.9e-58 228.0 229 54.1
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 2.6e-57 226.1 216 54.6
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 3.4e-57 225.7 218 54.1
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 3.8e-56 222.2 216 50.9
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 3.8e-56 222.2 214 51.9
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 4.2e-55 218.8 221 51.1
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.6e-54 216.9 223 51.1
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 2.7e-54 216.1 210 52.9
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 7.9e-54 214.5 221 48.0
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 1.1e-52 210.7 189 56.1
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 7.4e-52 208.0 218 52.3
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 1.4e-50 203.8 216 51.9
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 5.0e-48 195.3 216 48.1
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 2.3e-45 186.4 217 47.5
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 5.7e-44 181.8 221 47.1
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.0e-37 161.0 221 44.3
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 9.1e-34 147.9 104 61.5
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 2.2e-32 143.3 91 65.9
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 5.0e-32 142.1 97 62.9
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 8.5e-32 141.4 122 54.1
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 1.1e-31 141.0 121 54.5
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 3.0e-29 132.9 215 37.7
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 5.2e-29 132.1 102 59.8
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 4.5e-25 119.0 161 41.6
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 1.7e-24 117.1 99 54.5
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-24 115.9 97 61.9
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 5.0e-24 115.5 70 70.0
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 4.3e-23 112.5 162 38.9
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 2.8e-22 109.8 215 34.0
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 4.7e-22 109.0 223 33.6
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 8.0e-22 108.2 69 62.3
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 2.0e-20 103.6 219 33.8
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 3.2e-18 96.3 93 51.6
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 4.1e-18 95.9 62 66.1
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 2.0e-17 93.6 96 47.9
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 7.8e-17 91.7 106 44.3
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 8.6e-16 88.2 60 60.0
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 1.1e-15 87.8 83 55.4
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 7.3e-15 85.1 65 52.3
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 2.1e-14 83.6 77 45.5
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 2.1e-14 83.6 67 47.8
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 2.1e-14 83.6 67 47.8
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 2.8e-14 83.2 72 51.4
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 6.2e-14 82.0 47 63.8
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 6.2e-14 82.0 47 63.8
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 6.2e-14 82.0 47 63.8
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 1.4e-13 80.9 74 48.6
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.8e-13 80.5 45 64.4
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 2.3e-13 80.1 75 44.0
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 4.0e-13 79.3 192 28.1
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 4.0e-13 79.3 192 28.1
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 3.4e-12 76.3 106 41.5
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 1.2e-09 67.8 53 54.7
Lsat_1_v5_gn_1_40601 Lactuca sativa HOM05D002950 ORTHO05D009601 1.7e-08 63.9 236 27.5
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 3.9e-08 62.8 205 29.3
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 5.0e-08 62.4 37 59.5
Nitab4.5_0004088g0080 Nicotiana tabacum HOM05D002950 ORTHO05D009601 8.6e-08 61.6 202 26.2
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.5e-07 60.8 205 29.3
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.9e-07 60.5 205 28.8
Sed0010906 Sechium edule HOM05D002950 ORTHO05D009601 1.9e-07 60.5 246 27.6
Cc11_g13740 Coffea canephora HOM05D003287 ORTHO05D003688 2.5e-07 60.1 196 27.6
Migut.N00014 Erythranthe guttata HOM05D002950 ORTHO05D009601 2.5e-07 60.1 199 25.6
Sabra10G0120400 Salix brachista HOM05D003287 ORTHO05D003688 2.5e-07 60.1 199 28.1
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 2.5e-07 60.1 187 25.7
Nitab4.5_0008210g0020 Nicotiana tabacum HOM05D002950 ORTHO05D009601 3.3e-07 59.7 202 26.2
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 5.6e-07 58.9 196 25.0
Potri.010G158500 Populus trichocarpa HOM05D003287 ORTHO05D003688 5.6e-07 58.9 199 28.1
PGR119G1934 Punica granatum HOM05D003287 ORTHO05D003688 5.6e-07 58.9 218 24.8
RcHm_v2.0_Chr4g0445181 Rosa chinensis HOM05D003287 ORTHO05D003688 5.6e-07 58.9 198 25.3
FAN17G0444 Fragaria x ananassa HOM05D003287 ORTHO05D003688 7.3e-07 58.5 202 24.3
Gohir.A03G145300 Gossypium hirsutum HOM05D003287 ORTHO05D003688 9.5e-07 58.2 196 25.5
Gorai.005G189100 Gossypium raimondii HOM05D003287 ORTHO05D003688 9.5e-07 58.2 196 25.5
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 9.5e-07 58.2 196 26.0
Thecc.02G330400 Theobroma cacao HOM05D003287 ORTHO05D003688 9.5e-07 58.2 205 28.8
Atru.chr11.1634 Acer truncatum HOM05D003287 ORTHO05D003688 1.2e-06 57.8 198 27.3
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 1.2e-06 57.8 195 26.7
CAN.G756.8 Capsicum annuum HOM05D002950 ORTHO05D009601 1.2e-06 57.8 219 24.2
DCAR_023384 Daucus carota HOM05D002950 ORTHO05D009601 1.2e-06 57.8 207 26.1
Dinv16734 Davidia involucrata HOM05D003287 ORTHO05D003688 1.2e-06 57.8 198 27.8
Nitab4.5_0000408g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 1.2e-06 57.8 195 26.7
Peaxi162Scf00102g01048 Petunia axillaris HOM05D002950 ORTHO05D009601 1.2e-06 57.8 203 26.6
Hma1.2p1_1160F.1_g262450 Hydrangea macrophylla HOM05D002950 ORTHO05D009601 1.6e-06 57.4 205 27.3
Lj6P699T26 Lonicera japonica HOM05D002950 ORTHO05D009601 1.6e-06 57.4 199 25.1
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 1.6e-06 57.4 195 27.2
FvH4_4g35530 Fragaria vesca HOM05D003287 ORTHO05D003688 2.1e-06 57.0 204 25.0
FAN12G3100 Fragaria x ananassa HOM05D003287 ORTHO05D003688 2.1e-06 57.0 198 28.3
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 2.1e-06 57.0 196 26.5
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 2.1e-06 57.0 197 25.9
TAR374G1554 Trochodendron aralioides HOM05D003287 ORTHO05D003688 2.1e-06 57.0 201 26.9
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 2.8e-06 56.6 200 25.5
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 2.8e-06 56.6 196 25.0
Lsat_1_v5_gn_3_50580 Lactuca sativa HOM05D003287 ORTHO05D003688 2.8e-06 56.6 193 25.9
Nitab4.5_0002594g0060 Nicotiana tabacum HOM05D003287 ORTHO05D003688 2.8e-06 56.6 194 26.3
FAN22G2046 Fragaria x ananassa HOM05D003287 ORTHO05D003688 3.6e-06 56.2 202 23.8
FAN07G0260 Fragaria x ananassa HOM05D003287 ORTHO05D003688 4.7e-06 55.8 199 24.6
Hma1.2p1_0566F.1_g179780 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 4.7e-06 55.8 198 26.8
Manes.01G027500 Manihot esculenta HOM05D003287 ORTHO05D003688 4.7e-06 55.8 240 23.8
ATR0796G185 Amborella trichopoda HOM05D002950 ORTHO05D009601 6.2e-06 55.5 238 25.6
COL.COLO4_27884 Corchorus olitorius HOM05D003287 ORTHO05D003688 6.2e-06 55.5 210 27.1
Peaxi162Scf00175g00117 Petunia axillaris HOM05D003287 ORTHO05D003688 8.1e-06 55.1 198 27.3


User provided reference genes

Program Settings