Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.4e-96 356.3 184 100.0
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 3.6e-92 341.7 184 95.1
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 4.3e-77 291.6 180 80.0
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 4.3e-77 291.6 180 80.0
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 8.1e-76 287.3 181 81.8
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 1.1e-75 287.0 182 78.0
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 5.2e-75 284.6 180 76.7
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 8.9e-75 283.9 183 76.0
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.2e-74 283.5 183 77.6
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 2.6e-74 282.3 183 77.0
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.6e-74 282.3 180 77.2
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 2.2e-73 279.3 164 84.1
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 2.2e-73 279.3 180 77.2
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 2.9e-73 278.9 180 75.6
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 2.9e-73 278.9 182 74.7
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 3.7e-73 278.5 181 77.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 4.9e-73 278.1 180 77.2
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 8.3e-73 277.3 184 74.5
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.9e-72 276.2 182 73.6
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 5.4e-72 274.6 181 77.9
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 9.2e-72 273.9 182 73.1
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.2e-71 273.5 182 72.5
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.2e-71 273.5 182 72.5
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 2.7e-71 272.3 181 77.3
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.5e-71 271.9 180 75.0
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 7.8e-71 270.8 182 75.3
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 7.8e-71 270.8 182 75.3
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.0e-70 270.4 183 73.8
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.0e-70 270.4 183 74.3
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.3e-70 269.2 183 73.8
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 3.0e-70 268.9 180 74.4
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 75.0
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 3.9e-70 268.5 183 72.7
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 5.1e-70 268.1 180 73.9
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 5.1e-70 268.1 180 73.9
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 6.6e-70 267.7 180 73.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 6.6e-70 267.7 183 72.7
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 8.6e-70 267.3 183 72.7
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.1e-69 266.9 180 73.9
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.5e-69 266.5 180 73.9
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.5e-69 265.8 176 76.1
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.3e-69 265.4 179 73.2
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 4.3e-69 265.0 182 73.6
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 4.3e-69 265.0 182 73.6
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 4.3e-69 265.0 182 73.6
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 4.3e-69 265.0 181 71.3
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 7.3e-69 264.2 182 72.0
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.6e-68 263.1 182 73.1
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.8e-68 262.3 181 70.7
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 3.6e-68 261.9 181 69.6
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 4.7e-68 261.5 181 70.2
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.1e-67 260.4 181 72.9
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 1.1e-67 260.4 178 71.9
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.8e-67 259.6 183 69.9
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.8e-67 259.6 182 72.0
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.8e-67 259.6 178 73.0
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 3.1e-67 258.8 180 72.8
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 3.1e-67 258.8 182 73.1
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 5.2e-67 258.1 181 69.6
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 5.2e-67 258.1 182 72.0
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 8.9e-67 257.3 182 69.2
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.5e-66 256.5 178 70.8
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 2.0e-66 256.1 181 72.4
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.0e-66 256.1 182 70.3
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.6e-66 255.8 180 68.3
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 3.4e-66 255.4 181 71.3
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 5.8e-66 254.6 176 69.9
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 9.9e-66 253.8 180 70.6
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 9.9e-66 253.8 176 70.5
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 9.9e-66 253.8 176 71.6
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.7e-65 253.1 181 71.3
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.9e-65 252.3 181 70.7
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.8e-65 251.9 176 69.3
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 4.9e-65 251.5 180 69.4
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.9e-65 251.5 181 68.0
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 1.9e-64 249.6 176 69.9
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 1.9e-64 249.6 176 69.9
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 2.4e-64 249.2 181 69.6
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 3.2e-64 248.8 181 68.0
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 3.2e-64 248.8 174 70.7
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 4.2e-64 248.4 174 71.3
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.4e-64 248.1 176 70.5
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.6e-63 246.5 180 65.0
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 2.7e-63 245.7 179 68.2
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 7.8e-63 244.2 182 67.6
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 1.0e-62 243.8 180 66.1
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.3e-62 242.7 172 66.9
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.5e-61 239.2 174 66.7
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 2.5e-61 239.2 180 66.7
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 4.3e-61 238.4 174 66.7
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 4.3e-61 238.4 182 65.9
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.6e-61 238.0 182 66.5
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 9.6e-61 237.3 182 64.3
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.3e-60 236.9 171 67.8
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.8e-60 235.0 168 69.0
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 6.2e-60 234.6 184 65.2
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.3e-57 226.9 191 61.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 7.9e-55 217.6 176 61.9
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 4.3e-53 211.8 180 57.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.4e-51 206.1 137 74.5
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.2e-50 203.8 200 53.0
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.2e-49 199.5 199 51.8
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 6.4e-49 198.0 192 53.6
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.4e-48 196.1 174 58.0
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.3e-46 190.3 151 63.6
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.3e-45 185.7 156 62.2
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.6e-44 183.3 157 61.1
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.6e-42 176.0 119 73.9
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 6.0e-39 164.9 107 79.4
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 8.2e-36 154.5 104 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 2.4e-35 152.9 185 44.3
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 3.1e-35 152.5 178 46.1
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 6.9e-35 151.4 175 45.1
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 9.0e-35 151.0 183 45.4
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 4.5e-34 148.7 171 48.0
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 8.4e-33 144.4 182 44.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-32 143.3 189 42.9
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.7e-28 129.0 135 49.6
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.8e-28 128.6 171 40.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.3e-25 120.6 93 61.3
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.0e-22 109.4 93 55.9
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.8e-19 100.1 72 66.7
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.1e-19 99.4 84 59.5
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 2.6e-10 69.7 188 28.2
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.7e-09 67.0 44 70.5
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 1.7e-09 67.0 151 29.1
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 1.1e-08 64.3 154 28.6
PSO063G2693 Papaver somniferum HOM05D003111 ORTHO05D003502 1.1e-08 64.3 151 29.1
TWI34G0805 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 5.5e-08 62.0 151 25.2
Cfa015758 Carpinus fangiana HOM05D000012 ORTHO05D001372 7.2e-08 61.6 156 24.4
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 4.7e-07 58.9 162 28.4
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 4.7e-07 58.9 162 28.4
Zm00001eb303040 Zea mays HOM05D003111 ORTHO05D003502 6.1e-07 58.5 147 25.2
A08p07040 Brassica napus HOM05D003111 ORTHO05D003502 1.0e-06 57.8 169 27.2
BraA08t32715Z Brassica rapa HOM05D003111 ORTHO05D003502 1.0e-06 57.8 169 27.2
Cpa.g.sc68.12 Carica papaya HOM05D003111 ORTHO05D003502 1.8e-06 57.0 125 28.8
Lj5C60T4 Lonicera japonica HOM05D003111 ORTHO05D003502 1.8e-06 57.0 144 29.9
Nn8g39209 Nelumbo nucifera HOM05D003111 ORTHO05D003502 1.8e-06 57.0 159 26.4
Mapoly0114s0002 Marchantia polymorpha HOM05D003111 ORTHO05D003502 4.0e-06 55.8 121 31.4
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 4.0e-06 55.8 124 31.5
MSTRG.9457 Avicennia marina HOM05D003111 ORTHO05D003502 6.7e-06 55.1 145 26.2
CSS0042371 Camellia sinensis var. sinensis HOM05D003111 ORTHO05D003502 6.7e-06 55.1 155 27.1
CDE04G0555 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 8.8e-06 54.7 134 23.1
TWI18G0418 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 8.8e-06 54.7 139 28.1


User provided reference genes

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