Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 5.7e-86 320.9 158 100.0
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.4e-76 289.7 177 84.2
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 2.5e-70 268.9 178 79.8
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.3e-47 192.6 178 62.9
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.0e-46 189.5 181 61.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 5.9e-43 177.9 177 57.1
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 7.7e-43 177.6 177 54.8
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 7.7e-43 177.6 177 54.8
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.0e-42 177.2 177 54.2
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 2.2e-42 176.0 172 55.8
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 3.8e-42 175.3 179 56.4
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.1e-41 173.7 178 53.9
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.5e-41 173.3 177 53.7
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 4.2e-41 171.8 177 54.2
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 9.5e-41 170.6 177 53.7
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.2e-40 170.2 172 55.2
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 8.0e-40 167.5 177 51.4
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 8.0e-40 167.5 174 56.3
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 6.8e-39 164.5 175 57.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 8.8e-39 164.1 177 53.7
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.2e-38 163.7 177 55.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.5e-38 163.3 177 55.4
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 7.5e-38 161.0 177 52.5
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.8e-38 160.6 179 52.5
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.3e-37 160.2 178 53.9
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.3e-37 160.2 177 50.3
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.3e-37 160.2 179 53.6
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 2.8e-37 159.1 177 52.0
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.7e-37 158.7 177 50.8
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.8e-36 156.4 172 48.8
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 2.4e-36 156.0 177 50.8
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 4.1e-36 155.2 177 51.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 5.4e-36 154.8 178 48.3
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 5.4e-36 154.8 172 51.7
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.4e-36 154.8 172 51.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 5.4e-36 154.8 180 53.3
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 5.4e-36 154.8 177 48.6
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 9.2e-36 154.1 180 50.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 9.2e-36 154.1 180 50.0
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 9.2e-36 154.1 177 53.7
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.2e-35 153.7 172 51.7
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.6e-35 153.3 172 51.7
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.0e-35 152.9 178 52.2
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 4.5e-35 151.8 181 51.9
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 7.7e-35 151.0 178 51.7
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.0e-34 150.6 181 50.8
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.0e-34 150.6 180 48.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 6.6e-34 147.9 177 51.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 2.5e-33 146.0 172 51.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 3.3e-33 145.6 183 48.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.3e-33 145.6 173 49.7
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 9.5e-33 144.1 184 47.3
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 2.8e-32 142.5 175 48.6
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 4.7e-32 141.7 179 46.4
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.0e-31 140.6 181 47.0
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 3.0e-31 139.0 173 49.7
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 3.0e-31 139.0 177 50.3
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 5.2e-31 138.3 173 49.7
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 6.8e-31 137.9 172 46.5
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.9e-31 137.5 173 47.4
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.0e-30 136.3 174 45.4
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 2.0e-30 136.3 179 46.4
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 2.6e-30 136.0 183 49.2
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.4e-30 135.2 178 47.8
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 4.4e-30 135.2 169 46.7
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.3e-29 133.7 123 59.3
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.9e-29 132.5 179 44.1
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 2.9e-29 132.5 178 45.5
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 4.9e-29 131.7 177 43.5
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 4.9e-29 131.7 179 45.3
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 6.4e-29 131.3 177 45.8
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 8.3e-29 131.0 187 43.9
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.1e-28 130.6 170 45.9
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.8e-28 129.8 178 42.1
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.8e-28 129.8 174 44.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.8e-28 129.8 178 45.5
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.2e-28 129.0 171 45.6
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.1e-28 128.6 171 44.4
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 5.4e-28 128.3 181 45.9
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 4.6e-27 125.2 189 43.9
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.0e-26 124.0 178 43.8
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 6.6e-26 121.3 171 43.9
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 8.6e-26 120.9 119 51.3
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.1e-25 120.6 173 42.8
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.9e-25 119.8 176 44.9
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.3e-25 119.0 176 42.0
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.3e-25 119.0 178 39.9
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.3e-25 118.6 189 42.3
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 4.3e-25 118.6 175 41.7
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 7.3e-25 117.9 178 41.6
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.2e-24 117.1 182 42.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 2.1e-24 116.3 176 42.0
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.0e-23 112.1 131 51.1
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 6.8e-23 111.3 162 43.8
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.2e-22 110.5 185 38.4
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.0e-22 109.8 183 39.9
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 2.6e-22 109.4 178 39.9
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.4e-22 109.0 197 40.6
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.2e-21 106.3 169 40.8
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.2e-21 106.3 169 40.8
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.1e-20 104.0 174 42.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.9e-20 103.2 174 42.0
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.2e-20 102.4 174 41.4
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.4e-20 101.7 182 39.6
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 7.0e-20 101.3 174 41.4
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 7.0e-20 101.3 180 39.4
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 9.2e-20 100.9 178 40.4
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-19 100.1 152 44.1
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.6e-19 100.1 152 44.1
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.0e-19 99.8 169 42.0
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.7e-19 99.4 118 45.8
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.5e-19 99.0 183 39.9
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 4.6e-19 98.6 152 43.4
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 6.0e-19 98.2 103 57.3
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 3.0e-18 95.9 180 38.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 5.0e-18 95.1 178 39.3
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.0e-18 95.1 152 42.1
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.0e-18 95.1 179 39.1
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.6e-18 94.7 179 40.2
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.9e-17 93.2 169 40.2
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 2.5e-17 92.8 170 40.6
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 9.5e-17 90.9 169 40.2
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.2e-16 90.5 180 37.2
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.1e-16 89.7 118 45.8
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 3.6e-16 89.0 173 40.5
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 4.7e-16 88.6 175 37.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.7e-16 88.6 180 39.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.1e-15 87.4 180 40.0
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-15 87.4 169 38.5
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-15 87.4 170 38.8
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 6.8e-15 84.7 173 35.3
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 8.9e-15 84.3 178 38.8
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.5e-14 83.6 182 37.9
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 3.4e-14 82.4 185 35.7
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.3e-13 80.5 118 41.5
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 3.7e-13 79.0 153 38.6
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.4e-12 76.3 193 31.1
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.8e-08 62.8 117 34.2
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.6e-08 62.4 107 36.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.9e-07 57.8 92 38.0


User provided reference genes

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