Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011280 Quercus lobata HOM05D002687 ORTHO05D002052 6.7e-108 394.0 202 100.0
QL01p011270 Quercus lobata HOM05D002687 ORTHO05D002052 3.0e-47 192.6 196 54.6
QL01p011265 Quercus lobata HOM05D002687 ORTHO05D002052 6.4e-34 148.3 200 45.0
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.6e-27 126.3 197 40.6
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.1e-25 120.9 196 42.3
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.8e-23 113.6 196 40.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 1.5e-19 100.5 203 34.5
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.5e-19 99.0 199 39.7
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 5.8e-19 98.6 177 40.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 1.0e-18 97.8 187 35.3
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.9e-18 96.3 198 36.4
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 4.9e-18 95.5 171 38.0
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.4e-17 94.0 198 34.8
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.4e-17 94.0 199 35.2
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 1.9e-17 93.6 180 33.3
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 3.2e-17 92.8 198 32.8
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 7.1e-17 91.7 196 31.6
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 7.1e-17 91.7 198 33.8
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 7.1e-17 91.7 200 36.0
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.2e-16 90.9 198 32.3
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 3.5e-16 89.4 195 31.3
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 3.5e-16 89.4 189 36.5
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 6.0e-16 88.6 198 33.8
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.0e-16 88.6 196 33.7
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 7.9e-16 88.2 197 31.5
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 1.0e-15 87.8 201 34.3
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.0e-15 87.8 191 32.5
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.3e-15 87.4 176 34.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 3.9e-15 85.9 201 31.8
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 3.3e-14 82.8 204 31.4
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.3e-14 82.4 152 32.9
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 4.3e-14 82.4 188 33.0
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 5.7e-14 82.0 197 28.9
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 7.4e-14 81.6 197 28.4
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 9.6e-14 81.3 205 31.7
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 9.6e-14 81.3 193 29.5
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.3e-13 80.9 198 31.8
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.3e-13 80.9 197 27.9
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.1e-13 80.1 153 35.3
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.8e-13 79.7 198 29.8
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.8e-13 79.7 204 31.4
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 3.7e-13 79.3 198 29.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 8.2e-13 78.2 195 29.2
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 1.1e-12 77.8 153 34.6
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 1.1e-12 77.8 197 30.5
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.4e-12 77.4 153 34.0
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.4e-12 77.4 153 34.0
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 1.4e-12 77.4 199 30.7
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.4e-12 77.4 199 32.2
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.8e-12 77.0 179 34.1
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 1.8e-12 77.0 199 32.2
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.4e-12 76.6 199 31.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.1e-12 76.3 198 31.3
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 4.1e-12 75.9 194 28.9
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 4.1e-12 75.9 199 31.2
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.1e-12 75.9 191 33.0
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.1e-12 75.9 190 31.1
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 5.3e-12 75.5 195 32.8
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 6.9e-12 75.1 206 29.1
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 6.9e-12 75.1 206 29.1
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 6.9e-12 75.1 197 28.9
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 6.9e-12 75.1 190 30.5
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 6.9e-12 75.1 190 30.5
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 6.9e-12 75.1 199 29.6
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 2.0e-11 73.6 199 29.6
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 2.6e-11 73.2 197 28.9
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 2.6e-11 73.2 195 32.3
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 2.6e-11 73.2 201 31.3
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 2.6e-11 73.2 201 31.3
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 4.5e-11 72.4 203 32.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 5.8e-11 72.0 197 31.0
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 7.6e-11 71.6 200 30.5
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 7.6e-11 71.6 201 29.9
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-10 71.2 199 29.1
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 1.3e-10 70.9 199 27.1
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 1.7e-10 70.5 196 31.1
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 1.7e-10 70.5 209 27.8
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 1.7e-10 70.5 200 29.0
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.9e-10 69.7 176 32.4
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.9e-10 69.7 199 30.7
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 2.9e-10 69.7 199 28.6
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-10 69.7 179 31.8
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 5.0e-10 68.9 196 30.1
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 5.0e-10 68.9 154 34.4
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 6.5e-10 68.6 199 30.2
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 8.4e-10 68.2 195 29.2
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.4e-10 68.2 199 29.6
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 1.1e-09 67.8 209 28.7
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 1.4e-09 67.4 198 27.3
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 1.4e-09 67.4 205 28.3
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 2.5e-09 66.6 209 27.8
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 2.5e-09 66.6 209 27.8
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 2.5e-09 66.6 209 27.8
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 2.5e-09 66.6 158 31.0
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.5e-09 66.6 209 28.2
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 5.5e-09 65.5 198 24.7
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 5.5e-09 65.5 183 28.4
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 7.1e-09 65.1 202 26.2
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.2e-08 64.3 198 27.3
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 1.2e-08 64.3 207 30.0
Psat0s3916g0200 Pisum sativum HOM05D002687 ORTHO05D002052 1.6e-08 63.9 198 30.3
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.6e-08 63.9 204 28.4
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.1e-08 63.5 170 29.4
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 2.7e-08 63.2 209 27.3
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 2.7e-08 63.2 209 27.3
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 2.7e-08 63.2 209 27.3
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.7e-08 63.2 133 33.1
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 4.6e-08 62.4 164 31.7
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 1.0e-07 61.2 197 24.9
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 1.0e-07 61.2 209 26.8
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.0e-07 61.2 170 28.2
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-07 61.2 193 23.3
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.3e-07 60.8 195 28.2
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 2.3e-07 60.1 198 25.8
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.3e-07 60.1 210 26.7
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 3.0e-07 59.7 185 25.4
Lsat_1_v5_gn_3_114421 Lactuca sativa HOM05D002687 ORTHO05D002052 3.0e-07 59.7 173 28.9
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-07 59.7 159 30.8
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 6.7e-07 58.5 194 26.3
Aqoxy1G00679 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 1.1e-06 57.8 182 25.8
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.1e-06 57.8 207 26.6
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 1.1e-06 57.8 200 27.0
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 1.5e-06 57.4 194 25.8
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 1.5e-06 57.4 194 25.8
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 1.5e-06 57.4 194 25.8
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 1.9e-06 57.0 209 27.8
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 1.9e-06 57.0 209 27.8
MELO3C025576.2 Cucumis melo HOM05D002687 ORTHO05D034712 1.9e-06 57.0 192 27.6
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-06 57.0 152 32.9
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-06 57.0 152 32.9
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 2.5e-06 56.6 186 29.0
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 4.3e-06 55.8 178 28.1
Ca_09050_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 5.7e-06 55.5 184 31.0
Lsat_1_v5_gn_8_132721 Lactuca sativa HOM05D000973 ORTHO05D000652 5.7e-06 55.5 156 30.1
Actinidia37067 Actinidia chinensis HOM05D002687 ORTHO05D002052 9.7e-06 54.7 124 31.5
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 9.7e-06 54.7 204 28.4


User provided reference genes

Program Settings