Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011270 Quercus lobata HOM05D002687 ORTHO05D002052 5.0e-114 414.5 212 100.0
QL01p011280 Quercus lobata HOM05D002687 ORTHO05D002052 3.7e-48 195.7 196 54.6
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.7e-30 136.3 212 43.9
QL01p011265 Quercus lobata HOM05D002687 ORTHO05D002052 9.4e-28 127.9 202 43.1
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 9.8e-25 117.9 208 39.4
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.8e-23 113.6 200 40.0
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 3.1e-23 112.8 207 39.1
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 6.5e-21 105.1 201 37.8
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 3.2e-20 102.8 209 35.9
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 7.2e-20 101.7 184 36.4
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.1e-19 100.1 203 36.5
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 3.6e-19 99.4 207 32.4
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.6e-19 99.4 207 33.8
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 4.7e-19 99.0 185 34.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 4.7e-19 99.0 207 33.3
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 1.0e-18 97.8 178 32.6
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.0e-18 97.8 182 35.2
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 1.0e-18 97.8 182 35.2
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.3e-18 96.7 207 32.4
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 3.0e-18 96.3 203 35.0
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.0e-18 96.3 199 35.2
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 6.8e-18 95.1 184 34.8
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 8.8e-18 94.7 207 31.9
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 1.5e-17 94.0 206 31.6
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.5e-17 94.0 198 34.8
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 2.6e-17 93.2 210 34.3
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 7.5e-17 91.7 203 34.5
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 7.5e-17 91.7 209 30.6
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.3e-16 90.9 195 31.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 2.8e-16 89.7 205 31.2
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 4.9e-16 89.0 213 33.3
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 6.3e-16 88.6 192 31.8
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.3e-16 88.6 205 32.7
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.1e-15 87.8 201 31.8
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.8e-15 87.0 210 31.9
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 1.8e-15 87.0 213 31.9
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 2.4e-15 86.7 202 33.7
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 3.1e-15 86.3 201 33.8
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 4.1e-15 85.9 204 31.9
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 5.4e-15 85.5 163 30.1
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.0e-15 85.1 203 32.0
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.0e-15 85.1 203 32.0
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 7.0e-15 85.1 198 33.3
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.2e-14 84.3 198 30.8
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.6e-14 84.0 214 29.0
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.6e-14 84.0 208 29.8
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 2.0e-14 83.6 212 30.2
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 2.7e-14 83.2 183 33.3
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.7e-14 83.2 212 30.2
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 4.5e-14 82.4 206 30.6
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 5.9e-14 82.0 208 29.3
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 7.7e-14 81.6 212 29.7
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 7.7e-14 81.6 213 31.0
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.7e-14 81.6 202 29.2
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.0e-13 81.3 202 29.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.0e-13 81.3 193 32.6
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.3e-13 80.9 206 30.6
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 1.7e-13 80.5 206 28.6
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.7e-13 80.5 206 31.1
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.3e-13 80.1 177 30.5
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 5.0e-13 79.0 206 29.1
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 6.6e-13 78.6 207 29.5
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 8.6e-13 78.2 206 29.6
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 8.6e-13 78.2 206 30.6
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 8.6e-13 78.2 185 32.4
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.1e-12 77.8 206 27.2
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.5e-12 77.4 206 30.6
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.5e-12 77.4 187 30.5
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.5e-12 76.6 187 33.7
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 3.3e-12 76.3 179 35.2
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 5.6e-12 75.5 203 29.1
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.6e-12 75.5 206 27.7
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.6e-12 75.5 202 28.2
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.6e-11 73.9 179 29.1
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 2.8e-11 73.2 195 33.3
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 2.8e-11 73.2 184 32.6
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 3.6e-11 72.8 185 30.8
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 4.7e-11 72.4 185 32.4
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 6.1e-11 72.0 203 29.6
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 6.1e-11 72.0 210 29.0
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.4e-10 70.9 177 31.1
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.4e-10 70.9 183 31.7
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.8e-10 70.5 202 28.2
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 3.0e-10 69.7 206 30.6
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 4.0e-10 69.3 189 28.6
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 4.0e-10 69.3 206 29.1
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 5.2e-10 68.9 205 25.9
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 6.8e-10 68.6 197 31.0
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 6.8e-10 68.6 208 27.9
Aqoxy1G00679 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 8.9e-10 68.2 187 28.3
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 8.9e-10 68.2 159 29.6
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 1.2e-09 67.8 208 30.3
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 1.2e-09 67.8 208 30.3
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.5e-09 67.4 197 30.5
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.5e-09 67.4 183 31.1
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 1.5e-09 67.4 208 27.4
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 2.0e-09 67.0 191 30.9
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 2.6e-09 66.6 196 29.1
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 2.6e-09 66.6 196 29.1
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 2.6e-09 66.6 196 29.1
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.6e-09 66.6 193 29.5
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 2.6e-09 66.6 207 27.5
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 3.4e-09 66.2 194 30.4
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 5.7e-09 65.5 210 30.0
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 5.7e-09 65.5 210 30.0
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 5.7e-09 65.5 210 30.0
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 5.7e-09 65.5 195 27.7
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 5.7e-09 65.5 190 28.9
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 5.7e-09 65.5 190 28.9
Actinidia37067 Actinidia chinensis HOM05D002687 ORTHO05D002052 7.5e-09 65.1 121 32.2
Duzib150G0865 Durio zibethinus HOM05D002687 ORTHO05D002052 9.8e-09 64.7 162 32.1
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.9e-08 63.2 206 29.6
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 2.9e-08 63.2 206 26.7
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.9e-08 63.2 188 29.8
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 3.7e-08 62.8 184 27.7
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 3.7e-08 62.8 208 27.9
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 3.7e-08 62.8 209 29.2
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 4.9e-08 62.4 210 27.6
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 4.9e-08 62.4 206 27.7
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.4e-08 62.0 188 27.7
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.3e-08 61.6 208 26.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-07 61.2 206 27.7
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-07 61.2 206 27.7
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 1.4e-07 60.8 207 27.1
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.4e-07 60.8 191 26.7
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 1.8e-07 60.5 150 26.7
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 3.2e-07 59.7 210 26.2
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.1e-07 59.3 217 26.3
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 5.4e-07 58.9 203 28.1
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 5.4e-07 58.9 207 26.6
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 5.4e-07 58.9 207 26.6
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 5.4e-07 58.9 207 26.6
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 9.2e-07 58.2 208 25.5
Ciclev10012623m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.2e-06 57.8 202 23.8
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.2e-06 57.8 185 26.5
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.2e-06 57.8 207 24.6
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 1.6e-06 57.4 212 28.3
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 1.6e-06 57.4 211 27.0
TPR.G35561 Trifolium pratense HOM05D002687 ORTHO05D002052 1.6e-06 57.4 140 28.6
Ca_09050_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 2.0e-06 57.0 151 29.8
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 2.0e-06 57.0 179 26.3
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 2.7e-06 56.6 217 27.2
Sopen11g027590 Solanum pennellii HOM05D002687 ORTHO05D002052 3.5e-06 56.2 170 28.2
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 4.6e-06 55.8 149 31.5
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 4.6e-06 55.8 208 28.4
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 4.6e-06 55.8 208 28.4
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 4.6e-06 55.8 207 26.6
Psat0s3916g0200 Pisum sativum HOM05D002687 ORTHO05D002052 5.9e-06 55.5 209 26.8


User provided reference genes

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