Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 3.1e-193 678.3 355 100.0
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.5e-147 526.6 405 75.3
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 4.2e-113 412.1 401 61.6
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.6e-104 383.6 405 57.3
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 4.3e-102 375.6 345 60.6
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.2e-101 373.2 346 60.4
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.2e-101 373.2 347 59.1
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.1e-100 370.9 347 58.5
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.8e-100 370.2 408 54.4
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 2.0e-99 366.7 419 55.6
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 5.9e-99 365.2 352 61.1
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.3e-98 364.0 363 57.3
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.4e-97 360.5 418 53.1
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.6e-96 357.1 357 57.7
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 6.1e-96 355.1 345 59.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 6.1e-96 355.1 426 50.2
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.0e-95 352.8 415 53.7
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 6.7e-95 351.7 413 53.8
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 8.8e-95 351.3 427 52.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.5e-94 350.5 437 53.3
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 4.4e-94 349.0 349 58.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.3e-93 347.4 408 52.0
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.2e-93 346.7 350 56.6
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 3.7e-93 345.9 338 57.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 3.7e-93 345.9 344 57.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 4.8e-93 345.5 337 58.2
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 6.3e-93 345.1 335 57.9
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.1e-92 344.4 340 57.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-92 344.0 397 54.2
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 9.1e-92 341.3 343 57.1
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.2e-91 340.9 403 52.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 2.0e-91 340.1 342 57.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.5e-91 339.3 361 55.4
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 7.7e-91 338.2 403 51.9
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 7.7e-91 338.2 424 51.4
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.0e-90 337.8 412 52.2
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.7e-90 337.0 432 50.5
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.7e-90 337.0 431 49.4
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.2e-90 336.7 368 54.3
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.2e-90 336.7 425 52.0
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.8e-90 335.9 421 50.4
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 5.0e-90 335.5 434 50.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 8.5e-90 334.7 411 50.4
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.5e-89 333.2 412 51.5
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 3.2e-89 332.8 344 56.4
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.2e-89 332.4 433 48.5
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-89 332.0 429 51.0
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-89 332.0 434 49.1
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.2e-88 330.9 430 51.4
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-88 330.9 366 51.6
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 2.1e-88 330.1 417 52.8
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.1e-88 330.1 347 55.6
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 2.7e-88 329.7 395 50.4
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.8e-87 327.0 437 49.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.5e-86 323.9 409 51.1
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 9.7e-86 321.2 441 49.2
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.3e-85 320.9 346 54.3
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.7e-85 320.5 417 51.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.4e-84 317.4 357 52.4
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.1e-84 316.2 326 55.2
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.0e-83 313.5 343 53.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 3.5e-83 312.8 338 54.4
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 7.7e-83 311.6 334 53.6
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.2e-82 310.1 339 52.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 2.9e-82 309.7 333 54.4
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.0e-82 308.9 416 50.0
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 8.5e-82 308.1 401 49.4
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.1e-81 307.8 331 53.2
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.5e-81 307.4 338 52.7
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.9e-81 307.0 337 52.2
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.5e-81 306.6 340 53.5
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.5e-81 306.6 426 47.2
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 2.5e-81 306.6 400 49.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 2.5e-81 306.6 305 56.7
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.2e-81 306.2 334 53.3
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 4.2e-81 305.8 292 59.6
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 5.5e-81 305.4 351 50.7
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.6e-80 303.9 301 56.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.6e-80 303.9 399 49.4
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.1e-80 303.5 337 51.0
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.1e-80 303.5 337 51.0
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 2.1e-80 303.5 340 51.2
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.7e-80 303.1 343 51.9
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 3.6e-80 302.8 356 52.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.0e-79 301.2 410 46.3
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.3e-79 300.1 447 46.5
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 6.8e-79 298.5 368 49.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.2e-78 297.7 431 45.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.2e-78 297.7 315 57.5
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.5e-78 297.4 311 56.6
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.6e-78 296.6 315 57.1
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 7.5e-78 295.0 426 45.3
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.8e-77 293.1 284 58.8
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 2.8e-77 293.1 332 51.2
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 4.8e-77 292.4 293 57.3
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 6.3e-77 292.0 359 51.0
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 8.3e-77 291.6 430 48.1
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.1e-76 291.2 340 51.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.1e-76 291.2 289 56.1
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 3.1e-76 289.7 334 51.5
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-74 284.3 541 40.1
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 2.9e-74 283.1 417 45.6
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 3.2e-73 279.6 286 56.3
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 2.1e-72 276.9 286 55.2
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.6e-72 276.2 275 56.0
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 4.7e-72 275.8 306 52.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 4.0e-71 272.7 410 41.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.3e-69 267.7 269 56.9
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.9e-66 256.5 364 45.9
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 5.0e-66 255.8 302 52.0
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.9e-58 229.9 279 53.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 6.8e-55 218.8 198 63.6
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 2.6e-54 216.9 407 37.3
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.5e-49 200.3 291 46.0
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 2.0e-46 190.7 389 36.8
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 8.3e-45 185.3 217 54.4
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 9.2e-44 181.8 136 72.1
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.1e-41 174.9 230 46.1
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.8e-39 165.6 111 73.9
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-38 164.1 230 46.1
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.9e-37 159.5 156 58.3
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 8.3e-37 158.7 111 77.5
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-32 144.8 98 74.5
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.4e-28 130.6 136 58.8
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-27 128.3 166 45.2
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 8.7e-26 122.1 397 28.0
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 4.3e-25 119.8 342 29.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 2.1e-24 117.5 312 31.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 6.2e-24 115.9 96 63.5
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 4.0e-23 113.2 255 35.7
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.9e-23 112.5 66 86.4
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.6e-22 109.0 179 46.4
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.9e-20 104.4 66 81.8
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.2e-20 103.2 251 36.7
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.7e-19 100.5 94 59.6
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 6.0e-19 99.4 320 27.8
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-18 98.2 59 81.4
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.3e-18 98.2 156 39.1
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.3e-18 98.2 132 48.5
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.7e-18 97.8 64 78.1
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.9e-17 94.4 248 33.9
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.8e-16 90.5 62 79.0
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.6e-16 90.1 64 70.3
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 9.0e-15 85.5 261 33.0
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 9.9e-14 82.0 87 56.3
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-13 80.9 92 55.4
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.1e-11 74.3 126 40.5
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 2.5e-09 67.4 410 23.9
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.3e-08 65.1 107 43.9
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 8.1e-08 62.4 60 58.3
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-06 58.5 33 81.8


User provided reference genes

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