Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 5.8e-101 370.9 193 100.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.9e-75 286.2 193 78.8
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 4.2e-75 285.0 193 80.3
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.1e-74 282.7 193 76.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 4.6e-74 281.6 193 76.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.4e-73 280.0 193 76.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.3e-73 279.3 193 75.6
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 8.8e-73 277.3 192 75.0
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.1e-72 276.9 193 75.1
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.0e-72 276.2 193 74.6
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-72 276.2 193 75.6
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.3e-72 275.4 193 76.2
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.3e-72 275.4 193 74.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.3e-72 275.4 193 75.1
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 5.7e-72 274.6 193 75.1
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 7.4e-72 274.2 193 74.6
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 9.7e-72 273.9 193 74.6
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.7e-72 273.9 193 74.6
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.3e-71 273.5 193 75.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.7e-71 273.1 193 74.1
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-71 272.7 193 74.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.2e-71 272.7 193 72.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 2.8e-71 272.3 193 75.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.8e-71 271.6 193 74.1
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 8.2e-71 270.8 193 74.6
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 8.2e-71 270.8 193 74.6
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 8.2e-71 270.8 193 74.6
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 8.2e-71 270.8 193 75.1
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 8.2e-71 270.8 193 73.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.1e-70 270.4 193 74.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.8e-70 269.6 193 73.6
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.8e-70 269.6 194 73.7
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.4e-70 269.2 193 74.1
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.1e-70 268.9 193 71.5
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.1e-70 268.9 193 73.6
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.1e-70 268.9 193 73.6
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.1e-70 268.5 193 74.1
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 4.1e-70 268.5 193 72.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 6.9e-70 267.7 193 75.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 9.1e-70 267.3 193 72.5
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 2.6e-69 265.8 193 71.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.6e-69 265.8 193 71.0
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.6e-69 265.8 193 71.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.4e-69 265.4 193 74.1
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.4e-69 265.4 193 72.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 5.9e-69 264.6 193 71.0
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 5.9e-69 264.6 193 73.6
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.0e-68 263.8 193 70.5
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.0e-68 263.8 193 74.1
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.3e-68 263.5 193 72.0
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-68 263.1 193 72.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.9e-68 262.3 193 72.5
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.8e-68 261.9 193 71.5
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 5.0e-68 261.5 193 71.5
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 6.5e-68 261.2 193 72.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 6.5e-68 261.2 193 71.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 6.5e-68 261.2 193 71.0
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 8.5e-68 260.8 193 71.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-67 260.4 193 70.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.1e-67 260.4 193 69.9
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.1e-67 260.4 193 71.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.1e-67 260.4 193 70.5
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.1e-67 260.4 193 73.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-67 259.6 193 70.5
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.9e-67 259.6 195 70.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.2e-67 258.8 193 72.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.2e-67 258.5 195 70.3
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.2e-67 258.5 193 73.1
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.5e-67 258.1 192 72.4
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 9.4e-67 257.3 193 69.4
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.4e-67 257.3 193 69.4
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.2e-66 256.9 193 72.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.1e-66 256.1 195 70.3
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.7e-66 255.8 193 71.0
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-66 255.8 193 69.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.6e-66 255.4 193 70.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.6e-66 255.4 193 70.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.7e-66 255.0 193 68.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 4.7e-66 255.0 193 68.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 6.1e-66 254.6 191 70.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.4e-65 253.4 193 67.9
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.4e-65 253.4 192 70.8
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.8e-65 253.1 193 68.9
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-65 252.7 193 68.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.3e-65 252.7 193 69.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.0e-65 252.3 193 68.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 3.0e-65 252.3 193 68.9
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.0e-65 252.3 193 70.5
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.0e-65 252.3 193 69.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 3.0e-65 252.3 193 68.4
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 3.0e-65 252.3 192 70.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.9e-65 251.9 195 70.3
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.9e-65 251.9 193 69.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 5.1e-65 251.5 193 68.4
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.1e-65 251.5 192 69.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 5.1e-65 251.5 193 68.9
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.5e-64 250.0 193 67.9
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 3.3e-64 248.8 180 71.1
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.4e-64 248.4 193 67.4
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 4.4e-64 248.4 193 69.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.7e-64 247.3 185 70.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.3e-63 246.9 181 71.3
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.1e-62 243.8 186 71.5
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.1e-62 241.9 181 70.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 4.1e-62 241.9 181 70.7
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.3e-62 241.5 226 60.6
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 9.1e-62 240.7 190 67.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.0e-61 239.6 180 69.4
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.6e-61 239.2 181 69.1
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 4.5e-61 238.4 182 68.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 5.9e-61 238.0 181 70.7
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 5.9e-61 238.0 193 64.8
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-60 236.9 181 69.6
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.3e-60 236.9 181 69.6
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.7e-60 236.5 181 68.0
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 6.5e-60 234.6 127 93.7
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.9e-59 233.0 179 69.8
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 9.4e-59 230.7 193 63.2
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.6e-58 229.9 230 57.8
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.3e-57 226.1 204 61.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.3e-57 226.1 181 65.2
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.9e-57 225.3 192 62.5
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 6.7e-57 224.6 193 62.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.1e-54 217.2 127 84.3
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 2.5e-51 206.1 137 75.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.6e-50 203.4 131 75.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.3e-49 199.5 193 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 4.4e-48 195.3 193 56.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 2.0e-45 186.4 193 55.4
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.9e-44 182.6 193 54.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 9.4e-43 177.6 193 54.4
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.4e-38 162.9 101 78.2
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-38 162.5 115 70.4
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 9.1e-38 161.0 165 57.0
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.7e-37 159.5 216 43.1
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.2e-35 152.1 130 61.5
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.1e-34 149.8 90 78.9
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.7e-32 141.7 90 75.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.7e-31 140.2 194 40.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 4.1e-30 135.6 92 71.7
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-29 134.0 134 57.5
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.6e-26 122.5 139 53.2
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.0e-24 116.7 133 51.9
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-17 93.2 48 95.8
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.8e-16 88.6 93 52.7
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.2e-15 86.7 59 69.5
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.1e-13 80.1 114 45.6
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-11 73.6 68 51.5
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 2.5e-11 73.2 45 80.0
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.8e-10 69.7 208 28.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.2e-09 65.5 63 58.7


User provided reference genes

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