Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1752.6 847 100.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1587.8 847 92.8
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1491.9 840 85.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1470.7 972 75.3
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1437.9 837 82.2
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1413.7 833 80.9
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1412.5 832 80.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1404.4 835 79.4
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1399.4 832 80.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1396.3 834 79.5
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1392.1 845 78.9
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1386.7 841 78.7
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1386.7 842 78.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1384.0 841 78.7
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1383.2 836 78.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1377.1 840 79.9
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1376.3 841 78.1
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1376.3 840 78.1
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1372.1 843 78.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1372.1 838 78.5
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1371.7 837 78.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1370.9 841 78.0
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1369.8 843 78.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1369.4 843 78.5
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1369.0 849 78.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1369.0 837 77.9
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1362.4 843 78.5
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1360.5 849 77.9
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1356.3 835 77.7
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1354.3 836 77.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1354.0 837 77.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1349.7 836 77.2
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1346.6 836 77.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1344.7 834 78.2
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1344.7 833 76.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1342.8 843 76.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1342.4 835 77.1
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1341.6 835 76.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1340.9 837 76.5
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1337.8 843 76.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1337.0 841 76.8
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1335.1 838 77.4
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1333.5 834 76.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1332.8 834 76.5
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1329.7 841 76.6
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1328.5 834 75.7
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1328.2 834 76.4
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1326.2 838 76.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1321.6 845 74.1
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 847 75.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1320.4 837 75.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1318.1 834 73.7
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1317.0 834 74.8
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 843 74.9
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1311.2 833 74.7
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 834 74.7
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1303.5 874 72.7
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1300.4 843 73.7
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1300.0 832 73.8
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1293.9 829 74.2
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 836 73.6
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1290.8 833 73.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1288.5 834 74.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 842 72.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1270.4 838 73.0
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1270.0 793 77.0
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 839 73.1
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1261.5 843 70.9
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 836 71.2
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 835 72.3
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1239.2 855 69.8
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1231.5 849 70.6
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1215.7 844 69.3
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1215.3 735 78.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1214.1 856 69.3
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1210.7 760 76.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1209.9 843 70.0
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1205.7 844 68.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1201.0 939 64.6
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 842 68.4
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 844 67.9
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1189.9 837 67.6
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1189.1 841 68.1
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1185.2 841 68.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1182.2 841 68.3
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1181.4 842 67.9
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1179.9 842 68.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1179.1 842 68.1
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1176.4 835 68.4
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1175.2 845 67.7
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1171.4 845 67.8
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1157.5 847 65.9
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1120.9 831 65.0
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1117.4 836 63.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1116.3 832 63.9
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1105.5 841 64.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.2e-304 1049.7 833 61.9
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 8.9e-303 1043.5 670 73.9
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.1e-297 1026.5 648 75.9
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 8.9e-295 1016.9 833 62.5
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.4e-286 988.4 583 80.4
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.1e-252 877.1 889 50.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.1e-247 860.5 859 52.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.0e-246 856.3 861 49.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.0e-221 774.2 833 49.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.7e-185 652.1 466 68.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.6e-181 638.3 401 75.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.3e-149 533.9 402 65.9
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.7e-141 507.7 367 65.4
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 8.1e-139 498.8 356 64.6
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.1e-127 459.1 264 80.7
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 3.8e-112 410.2 300 71.0
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.9e-111 407.9 831 36.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.5e-111 406.4 233 81.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.8e-107 394.0 500 46.6
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 3.2e-103 380.6 1014 30.2
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 6.3e-99 366.3 1134 27.1
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 4.1e-98 363.6 875 31.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.0e-94 349.4 304 56.6
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.8e-93 345.9 195 80.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-92 345.5 193 82.9
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.0e-92 344.7 247 72.9
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.3e-92 344.0 267 62.5
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.2e-86 325.5 192 79.2
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 4.7e-70 270.4 593 33.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 8.9e-53 213.0 220 49.1
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.1e-46 189.9 154 59.7
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-44 185.3 211 46.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.0e-44 185.3 211 46.0
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.4e-42 178.3 101 80.2
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.3e-40 172.6 127 66.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.5e-39 169.1 99 78.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.5e-31 142.5 78 84.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.3e-31 141.4 96 67.7
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-30 139.4 73 86.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.9e-26 125.6 200 39.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.3e-24 118.6 69 78.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 4.8e-22 110.9 60 86.7
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.1e-22 110.2 64 78.1
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-21 109.8 65 67.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.2e-20 106.3 54 87.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 9.9e-20 103.2 131 41.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.2e-19 102.1 107 55.1
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.2e-17 96.3 136 41.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-17 95.9 98 50.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 6.0e-17 94.0 106 51.9
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 6.7e-16 90.5 62 62.9
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 4.5e-12 77.8 107 38.3
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 4.9e-11 74.3 86 50.0
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 3.5e-09 68.2 174 29.9
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 2.3e-08 65.5 174 27.6
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 6.7e-08 63.9 174 28.2
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 6.7e-08 63.9 174 26.4
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 1.9e-07 62.4 148 31.1
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 1.9e-07 62.4 148 31.1
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.9e-07 62.4 174 28.7
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 1.9e-07 62.4 373 22.8
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 2.5e-07 62.0 148 29.1
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 2.5e-07 62.0 143 23.8
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 3.3e-07 61.6 148 28.4
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 3.3e-07 61.6 147 30.6
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 3.3e-07 61.6 143 28.7
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 3.3e-07 61.6 173 27.7
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 4.3e-07 61.2 148 29.1
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 4.3e-07 61.2 31 93.5
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 4.3e-07 61.2 373 21.4
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 5.7e-07 60.8 174 27.0
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 7.4e-07 60.5 190 26.3
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 7.4e-07 60.5 170 27.6
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 1.3e-06 59.7 174 27.6
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.3e-06 59.7 126 31.7
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.3e-06 59.7 190 26.8
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 1.6e-06 59.3 173 28.9
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 2.1e-06 58.9 170 27.6
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 2.1e-06 58.9 174 25.3
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 2.1e-06 58.9 148 29.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.8e-06 58.5 190 26.8
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 2.8e-06 58.5 170 27.1
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 3.7e-06 58.2 172 26.7
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 3.7e-06 58.2 148 27.0
Manes.01G131200 Manihot esculenta HOM05D001610 ORTHO05D001585 4.8e-06 57.8 118 30.5
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 6.3e-06 57.4 141 30.5
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 6.3e-06 57.4 141 30.5
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 6.3e-06 57.4 147 28.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 8.2e-06 57.0 190 26.3


User provided reference genes

Program Settings