Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1629.4 794 100.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1586.6 847 92.8
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1348.6 838 79.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1328.5 970 70.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 836 76.6
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 831 75.5
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 831 75.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1275.4 831 75.2
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1271.9 841 73.4
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1264.6 833 73.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1260.0 840 73.1
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1256.1 844 73.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 833 73.7
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1249.2 840 73.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1245.7 835 72.7
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1243.8 836 72.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 836 72.8
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 840 74.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1240.3 840 72.5
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1238.8 837 73.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1238.8 834 72.7
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1238.4 842 73.0
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1236.1 842 72.9
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 842 72.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1235.3 848 72.8
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1233.8 832 72.6
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1232.6 836 72.1
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 823 72.9
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1229.2 842 72.9
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1226.5 848 72.3
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1226.1 836 71.8
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1224.2 833 71.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1220.3 833 71.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1219.9 832 72.0
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1219.9 831 72.9
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1218.0 832 71.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1217.2 840 70.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1212.6 836 71.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1212.2 840 70.7
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1206.0 836 70.9
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1206.0 833 71.7
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1202.6 832 70.4
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1201.4 835 71.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1197.2 837 71.7
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1196.8 833 70.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1196.4 841 69.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 833 70.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 840 70.5
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1194.5 844 69.0
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1190.6 833 70.8
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1189.9 846 69.7
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1186.0 843 69.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1181.0 833 68.1
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1179.9 787 72.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1179.1 833 69.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1174.8 833 68.9
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1172.5 831 68.7
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1169.8 873 67.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 832 68.8
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1167.5 832 68.6
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1162.1 835 68.1
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1160.6 833 68.4
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1157.9 828 68.5
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1152.9 833 68.3
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 840 66.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1137.1 838 67.5
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 837 67.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 835 66.7
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1129.4 839 65.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1123.6 834 66.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1108.6 854 64.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1097.8 848 65.2
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1087.8 757 71.1
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1087.0 843 64.1
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1084.7 734 71.9
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1080.5 855 64.0
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1078.2 838 63.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 5.4e-312 1074.7 842 64.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 5.4e-312 1073.5 842 63.5
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 2.7e-311 1071.6 843 62.9
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.6e-309 1065.8 938 59.5
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 5.0e-308 1060.8 837 62.2
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 4.3e-307 1057.7 840 62.7
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 9.5e-307 1056.6 844 63.0
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 3.6e-306 1054.7 840 62.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 4.7e-306 1054.3 839 62.8
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 6.1e-306 1053.9 840 62.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.0e-305 1053.1 835 63.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.4e-305 1052.7 843 63.0
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 6.8e-305 1050.4 834 62.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 8.9e-305 1050.0 841 62.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.3e-297 1025.4 839 60.8
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.0e-292 1010.0 795 62.9
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 7.3e-291 1003.8 835 58.8
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 1.2e-290 1003.0 831 59.1
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 4.1e-286 988.0 839 58.8
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 3.9e-268 928.3 832 57.1
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.9e-263 912.1 669 67.3
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 5.6e-259 897.9 785 60.0
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.6e-259 897.9 643 69.2
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-245 852.8 583 72.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 5.1e-228 795.0 780 53.1
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.6e-221 773.5 888 46.5
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 7.4e-219 764.6 855 48.3
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.4e-217 760.4 861 46.1
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.0e-181 638.3 401 75.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-149 533.9 402 65.9
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.7e-144 516.9 392 66.1
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.3e-118 430.3 778 38.9
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 9.4e-113 412.1 299 71.2
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.7e-110 402.1 233 80.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.4e-103 381.7 367 53.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.4e-102 376.7 357 53.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.0e-98 365.5 464 46.8
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.5e-94 349.4 304 56.6
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.7e-93 347.1 241 72.2
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-92 345.5 193 82.9
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 5.0e-90 336.7 222 73.9
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 3.8e-82 310.5 872 29.5
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 9.2e-76 289.3 541 37.0
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 2.7e-75 287.7 1135 24.9
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.9e-68 265.0 814 29.1
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.7e-58 231.9 275 48.0
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 8.3e-53 213.0 220 49.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 5.4e-52 210.3 522 31.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 5.4e-52 210.3 522 31.0
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-51 209.1 195 56.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 5.6e-49 200.3 150 68.0
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.7e-45 188.7 154 59.1
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.3e-42 178.3 101 80.2
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.2e-40 172.6 127 66.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.1e-39 169.5 99 78.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.4e-31 142.5 78 84.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.1e-31 141.4 96 67.7
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-30 139.4 73 86.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.3e-26 125.9 220 37.3
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.1e-24 118.6 69 78.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 4.5e-22 110.9 60 86.7
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.6e-22 110.2 64 78.1
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 9.9e-22 109.8 65 67.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.7e-21 109.0 53 86.8
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 9.3e-20 103.2 131 41.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.1e-19 102.1 107 55.1
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-17 95.9 98 50.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 5.6e-17 94.0 106 51.9
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 2.1e-16 92.0 136 40.4
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 3.7e-16 91.3 75 56.0
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 4.2e-12 77.8 107 38.3
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 4.6e-11 74.3 86 50.0
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 3.3e-09 68.2 174 29.9
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 2.2e-08 65.5 174 27.6
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 6.3e-08 63.9 174 28.2
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 6.3e-08 63.9 174 26.4
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 1.8e-07 62.4 148 31.1
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 1.8e-07 62.4 148 31.1
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.8e-07 62.4 174 28.7
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 2.4e-07 62.0 148 29.1
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 2.4e-07 62.0 143 23.8
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 3.1e-07 61.6 148 28.4
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 3.1e-07 61.6 147 30.6
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 3.1e-07 61.6 143 28.7
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 3.1e-07 61.6 173 27.7
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 4.1e-07 61.2 148 29.1
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 4.1e-07 61.2 31 93.5
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 5.3e-07 60.8 174 27.0
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 5.3e-07 60.8 411 21.2
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 6.9e-07 60.5 190 26.3
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 6.9e-07 60.5 170 27.6
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 1.2e-06 59.7 174 27.6
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.2e-06 59.7 126 31.7
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.2e-06 59.7 190 26.8
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 1.5e-06 59.3 173 28.9
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 2.0e-06 58.9 170 27.6
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 2.0e-06 58.9 174 25.3
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 2.0e-06 58.9 148 29.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.6e-06 58.5 190 26.8
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 2.6e-06 58.5 170 27.1
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 3.4e-06 58.2 172 26.7
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 3.4e-06 58.2 148 27.0
Manes.01G131200 Manihot esculenta HOM05D001610 ORTHO05D001585 4.5e-06 57.8 118 30.5
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 5.9e-06 57.4 141 30.5
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 5.9e-06 57.4 141 30.5
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 5.9e-06 57.4 147 28.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 7.7e-06 57.0 190 26.3
BcaB08g35394 Brassica carinata HOM05D000464 ORTHO05D006292 1.0e-05 56.6 141 30.5
SalBow6G1450 Salvia bowleyana HOM05D000464 ORTHO05D006292 1.0e-05 56.6 170 26.5
SalBow6G2987 Salvia bowleyana HOM05D000464 ORTHO05D006292 1.0e-05 56.6 170 26.5


User provided reference genes

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