Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p010535 Quercus lobata HOM05D001016 ORTHO05D337480 1.8e-40 168.7 80 100.0
Ca_13821_v3 Cicer arietinum L. HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
Lj3g0021477 Lotus japonicus HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
Psat7g237440 Pisum sativum HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
SalBow2G1836 Salvia bowleyana HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
TPR.G5560 Trifolium pratense HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
TAR369G0521 Trochodendron aralioides HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
GSVIVG01025496001 Vitis vinifera HOM05D001016 ORTHO05D008249 9.1e-16 86.7 40 100.0
Actinidia16232 Actinidia chinensis HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
CSS0033947 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
Cfa009543 Carpinus fangiana HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
Dinv05313 Davidia involucrata HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
Manes.15G110600 Manihot esculenta HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
Nitab4.5_0002068g0030 Nicotiana tabacum HOM05D001016 ORTHO05D008249 1.2e-15 86.3 42 95.2
Rhsim13G0234000 Rhododendron simsii HOM05D001016 ORTHO05D008249 1.2e-15 86.3 40 97.5
AL1G63530 Arabidopsis lyrata HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
AT1G55510 Arabidopsis thaliana HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
BcaB04g16954 Brassica carinata HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Carub.0001s4400 Capsella rubella HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
CARHR045180 Cardamine hirsuta HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
CARHR088110 Cardamine hirsuta HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Thhalv10011610m.g Eutrema salsugineum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Thhalv10021009m.g Eutrema salsugineum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Gohir.A05G000800 Gossypium hirsutum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Gohir.D05G001100 Gossypium hirsutum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Gorai.009G001000 Gossypium raimondii HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Nitab4.5_0001513g0010 Nicotiana tabacum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Nitab4.5_0001958g0030 Nicotiana tabacum HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Oeu035872.2 Olea europaea HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Sp1g41120 Schrenkiella parvula HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Sp3g11660 Schrenkiella parvula HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
Thecc.09G197600 Theobroma cacao HOM05D001016 ORTHO05D008249 2.0e-15 85.5 40 97.5
ATR0697G274 Amborella trichopoda HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 95.0
Aqoxy1G00496 Aquilegia oxysepala HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 95.0
DCAR_001966 Daucus carota HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 95.0
MD03G1002200 Malus domestica HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 97.5
PGR119G1992 Punica granatum HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 95.0
QL01p010541 Quercus lobata HOM05D001016 ORTHO05D008249 2.6e-15 85.1 40 97.5
Glyma.01G103100 Glycine max HOM05D001016 ORTHO05D008249 3.5e-15 84.7 40 95.0
MD11G1002200 Malus domestica HOM05D001016 ORTHO05D008249 3.5e-15 84.7 40 95.0
Medtr4g021470 Medicago truncatula HOM05D001016 ORTHO05D008249 3.5e-15 84.7 40 97.5
Prupe.6G002000 Prunus persica HOM05D001016 ORTHO05D008249 3.5e-15 84.7 40 97.5
AT3G13450 Arabidopsis thaliana HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
MSTRG.18034 Avicennia marina HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
CANSAT11G1639 Cannabis sativa HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
Migut.D02576 Erythranthe guttata HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 97.5
FvH4_3g45860 Fragaria vesca HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
FAN11G1963 Fragaria x ananassa HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
FAN21G0989 Fragaria x ananassa HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
FAN25G1184 Fragaria x ananassa HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
RcHm_v2.0_Chr5g0083951 Rosa chinensis HOM05D001016 ORTHO05D008249 4.5e-15 84.3 40 95.0
arahy.Tifrunner.gnm1.ann1.FP34HI Arachis hypogaea HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 95.0
CAN.G270.1 Capsicum annuum HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 95.0
Duzib168G1887 Durio zibethinus HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 95.0
Eucgr.J01753 Eucalyptus grandis HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 92.5
Glyma.03G070200 Glycine max HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 95.0
Hma1.2p1_0256F.1_g103310 Hydrangea macrophylla HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 92.5
Nn7g35831 Nelumbo nucifera HOM05D001016 ORTHO05D008249 5.9e-15 84.0 40 95.0
BcaC01g01530 Brassica carinata HOM05D001016 ORTHO05D008249 7.7e-15 83.6 40 95.0
CiPaw.13G178500 Carya illinoinensis HOM05D001016 ORTHO05D008249 7.7e-15 83.6 40 95.0
Cc01_g00240 Coffea canephora HOM05D001016 ORTHO05D008249 7.7e-15 83.6 40 92.5
ECA238G3960 Erigeron canadensis HOM05D001016 ORTHO05D008249 7.7e-15 83.6 40 95.0
AL3G25360 Arabidopsis lyrata HOM05D001016 ORTHO05D008249 1.0e-14 83.2 40 95.0
Lsat_1_v5_gn_2_48100 Lactuca sativa HOM05D001016 ORTHO05D008249 1.0e-14 83.2 40 95.0
TWI60G0604 Tripterygium wilfordii HOM05D001016 ORTHO05D008249 1.0e-14 83.2 40 95.0
Atru.chr3.2066 Acer truncatum HOM05D001016 ORTHO05D008249 1.3e-14 82.8 40 92.5
Lj9A731G44 Lonicera japonica HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 92.5
PSO161G0047 Papaver somniferum HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 92.5
PSO478G2083 Papaver somniferum HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 92.5
Phvul.010G017700 Phaseolus vulgaris HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 92.5
Potri.003G222800 Populus trichocarpa HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 90.0
VMungo0331G1935 Vigna mungo HOM05D001016 ORTHO05D008249 1.7e-14 82.4 40 92.5
ClCG03G014630 Citrullus lanatus HOM05D001016 ORTHO05D008249 2.2e-14 82.0 40 92.5
Sed0008695 Sechium edule HOM05D001016 ORTHO05D008249 2.2e-14 82.0 40 92.5
MELO3C015564.2 Cucumis melo HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 90.0
CsaV3_1G041530 Cucumis sativus L. HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 90.0
Hund21454 Selenicereus undatus HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 87.5
THA.LOC104810316 Tarenaya hassleriana HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 92.5
THA.LOC104822695 Tarenaya hassleriana HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 92.5
HPP92_019523 Vanilla planifolia HOM05D001016 ORTHO05D008249 2.9e-14 81.6 40 90.0
Solyc01g028900.3 Solanum lycopersicum HOM05D001016 ORTHO05D008249 3.8e-14 81.3 40 92.5
Sopen01g017080 Solanum pennellii HOM05D001016 ORTHO05D008249 3.8e-14 81.3 40 92.5
HanXRQChr14g0437161 Helianthus annuus HOM05D001016 ORTHO05D008249 5.0e-14 80.9 40 92.5
Lalb_Chr12g0209531 Lupinus albus HOM05D001016 ORTHO05D008249 5.0e-14 80.9 40 92.5
Os07g0170100 Oryza sativa ssp. japonica HOM05D001016 ORTHO05D008249 5.0e-14 80.9 40 90.0
Peaxi162Scf00200g01316 Petunia axillaris HOM05D001016 ORTHO05D008249 5.0e-14 80.9 44 84.1
Zm00001eb117100 Zea mays HOM05D001016 ORTHO05D008249 6.5e-14 80.5 40 87.5
Mapoly0008s0179 Marchantia polymorpha HOM05D001016 ORTHO05D008249 8.5e-14 80.1 40 90.0
Sc10g0003180 Simmondsia chinensis HOM05D001016 ORTHO05D008249 1.1e-13 79.7 40 85.0
Pp3c20_1720 Physcomitrium patens HOM05D001016 ORTHO05D008249 1.9e-13 79.0 40 85.0
CDE05G0325 Ceratophyllum demersum HOM05D001016 ORTHO05D008249 9.4e-13 76.6 40 82.5
CDE02G0665 Ceratophyllum demersum HOM05D001016 ORTHO05D008249 2.1e-12 75.5 40 80.0
unitig_22.g5857 Utricularia gibba HOM05D001016 ORTHO05D008249 8.0e-12 73.6 40 80.0
COL.COLO4_35079 Corchorus olitorius HOM05D001016 ORTHO05D008249 2.0e-10 68.9 31 100.0
SGA_v2.0_scaffold6G03349 Striga asiatica HOM05D001016 ORTHO05D008249 5.7e-10 67.4 30 96.7
Cpa.g.sc119.29 Carica papaya HOM05D001016 ORTHO05D008249 1.3e-09 66.2 31 93.5
Ciclev10015660m.g Citrus clementina HOM05D001016 ORTHO05D008249 1.3e-09 66.2 29 100.0
Haze_22928 Corylus avellana HOM05D001016 ORTHO05D008249 1.3e-09 66.2 29 100.0
Lj9C735G12 Lonicera japonica HOM05D000412 ORTHO05D000429 1.3e-09 66.2 31 96.8
Sabra03G0165700 Salix brachista HOM05D001016 ORTHO05D008249 2.2e-09 65.5 30 90.0
SMO144G0156 Selaginella moellendorffii HOM05D001016 ORTHO05D008249 2.2e-09 65.5 33 84.8
A08p00610 Brassica napus HOM05D001016 ORTHO05D008249 2.8e-09 65.1 29 96.6
C03p92820 Brassica napus HOM05D001016 ORTHO05D008249 2.8e-09 65.1 29 96.6
BolC3t21588H Brassica oleracea HOM05D001016 ORTHO05D008249 2.8e-09 65.1 29 96.6
BraA08t32118Z Brassica rapa HOM05D001016 ORTHO05D008249 2.8e-09 65.1 29 96.6
EL10Ac4g10392 Beta vulgaris HOM05D001016 ORTHO05D008249 3.7e-09 64.7 31 83.9
Ah.04g161400 Amaranthus hybridus HOM05D001016 ORTHO05D008249 1.4e-08 62.8 29 86.2
AUR62042624 Chenopodium quinoa HOM05D001016 ORTHO05D008249 1.4e-08 62.8 29 86.2
MBI11_g05459_MAGBIO Magnolia biondii HOM05D001016 ORTHO05D008249 9.1e-08 60.1 29 86.2
PRCOL_00005038 Prasinoderma coloniale HOM05D001016 ORTHO05D008249 1.0e-06 56.6 40 57.5
Cre06.g311050 Chlamydomonas reinhardtii HOM05D001016 ORTHO05D008249 5.0e-06 54.3 40 52.5


User provided reference genes

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