Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p010229 Quercus lobata HOM05D002613 ORTHO05D337000 1.8e-133 479.2 230 100.0
QL01p010147 Quercus lobata HOM05D002613 ORTHO05D003140 2.3e-43 179.9 465 35.1
CiPaw.13G171200 Carya illinoinensis HOM05D002613 ORTHO05D003140 4.6e-28 129.0 473 29.6
Cfa009628 Carpinus fangiana HOM05D002613 ORTHO05D003140 1.9e-26 123.6 461 29.5
Haze_22997 Corylus avellana HOM05D002613 ORTHO05D003140 1.4e-24 117.5 490 28.0
Prupe.6G012300 Prunus persica HOM05D002613 ORTHO05D003140 3.1e-24 116.3 375 30.7
Lj2C680G1 Lonicera japonica HOM05D002613 ORTHO05D003140 2.9e-22 109.8 221 34.8
Atru.chr3.2189 Acer truncatum HOM05D002613 ORTHO05D003140 8.4e-22 108.2 471 26.3
Eucgr.B02614 Eucalyptus grandis HOM05D002613 ORTHO05D003140 4.2e-21 105.9 452 27.9
TWI34G1355 Tripterygium wilfordii HOM05D002613 ORTHO05D003140 1.6e-20 104.0 432 27.8
ClCG02G023810 Citrullus lanatus HOM05D002613 ORTHO05D003140 6.0e-20 102.1 451 27.1
Thecc.01G283400 Theobroma cacao HOM05D002613 ORTHO05D003140 3.9e-19 99.4 422 28.7
COL.COLO4_36417 Corchorus olitorius HOM05D002613 ORTHO05D003140 1.5e-18 97.4 422 28.2
MD03G1012100 Malus domestica HOM05D002613 ORTHO05D003140 2.5e-18 96.7 444 27.3
GSVIVG01025382001 Vitis vinifera HOM05D002613 ORTHO05D003140 4.3e-18 95.9 413 27.1
RcHm_v2.0_Chr5g0081231 Rosa chinensis HOM05D002613 ORTHO05D003140 2.1e-17 93.6 456 25.0
Phvul.011G030900 Phaseolus vulgaris HOM05D002613 ORTHO05D003140 2.8e-17 93.2 353 28.0
vmacro20877 Vaccinium macrocarpon HOM05D002613 ORTHO05D003140 3.6e-17 92.8 146 43.2
Ca_19031_v3 Cicer arietinum L. HOM05D002613 ORTHO05D003140 6.2e-17 92.0 441 26.3
Dinv36334 Davidia involucrata HOM05D002613 ORTHO05D003140 8.1e-17 91.7 254 31.5
Hma1.2p1_0972F.1_g242880 Hydrangea macrophylla HOM05D002613 ORTHO05D003140 8.1e-17 91.7 187 39.0
Gohir.A11G121100 Gossypium hirsutum HOM05D002613 ORTHO05D003140 1.1e-16 91.3 451 26.2
Gorai.007G134900 Gossypium raimondii HOM05D002613 ORTHO05D003140 1.1e-16 91.3 462 24.9
arahy.Tifrunner.gnm1.ann1.64XXL3 Arachis hypogaea HOM05D002613 ORTHO05D003140 1.4e-16 90.9 353 27.2
arahy.Tifrunner.gnm1.ann1.QWKW36 Arachis hypogaea HOM05D002613 ORTHO05D003140 1.4e-16 90.9 353 27.2
TAR626G0637 Trochodendron aralioides HOM05D002613 ORTHO05D003140 1.4e-16 90.9 188 38.8
Duzib133G0550 Durio zibethinus HOM05D002613 ORTHO05D003140 1.8e-16 90.5 456 25.9
AL6G44690 Arabidopsis lyrata HOM05D002613 ORTHO05D003140 2.4e-16 90.1 367 26.2
Lj3g0010476 Lotus japonicus HOM05D002613 ORTHO05D003140 3.1e-16 89.7 353 26.3
Thhalv10028526m.g Eutrema salsugineum HOM05D002613 ORTHO05D003140 4.0e-16 89.4 346 27.7
Potri.001G010400 Populus trichocarpa HOM05D002613 ORTHO05D003140 5.3e-16 89.0 478 25.9
ECA246G0761 Erigeron canadensis HOM05D002613 ORTHO05D003140 6.9e-16 88.6 173 36.4
Sed0009746 Sechium edule HOM05D002613 ORTHO05D003140 6.9e-16 88.6 71 60.6
TPR.G32322 Trifolium pratense HOM05D002613 ORTHO05D003140 6.9e-16 88.6 352 26.7
COL.COLO4_09136 Corchorus olitorius HOM05D002613 ORTHO05D003140 9.0e-16 88.2 295 30.5
FAN21G1366 Fragaria x ananassa HOM05D002613 ORTHO05D003140 9.0e-16 88.2 455 24.6
Glyma.11G101800 Glycine max HOM05D002613 ORTHO05D003140 1.2e-15 87.8 69 59.4
QL01p010206 Quercus lobata HOM05D002613 ORTHO05D337184 1.2e-15 87.8 44 100.0
BcaC04g21051 Brassica carinata HOM05D002613 ORTHO05D003140 1.5e-15 87.4 85 50.6
C09p36220 Brassica napus HOM05D002613 ORTHO05D003140 1.5e-15 87.4 85 50.6
BolC9t56460H Brassica oleracea HOM05D002613 ORTHO05D003140 1.5e-15 87.4 85 50.6
Sabra01G0008200 Salix brachista HOM05D002613 ORTHO05D003140 1.5e-15 87.4 189 37.6
Actinidia06299 Actinidia chinensis HOM05D002613 ORTHO05D003140 2.0e-15 87.0 164 37.2
FAN11G0610 Fragaria x ananassa HOM05D002613 ORTHO05D003140 2.0e-15 87.0 443 24.6
ECA248G0452 Erigeron canadensis HOM05D002613 ORTHO05D003140 3.4e-15 86.3 173 36.4
Actinidia39365 Actinidia chinensis HOM05D002613 ORTHO05D003140 4.5e-15 85.9 286 29.7
BcaB01g01493 Brassica carinata HOM05D002613 ORTHO05D003140 5.8e-15 85.5 93 47.3
Gohir.D11G126200 Gossypium hirsutum HOM05D002613 ORTHO05D003140 5.8e-15 85.5 368 26.4
VMungo1080G0556 Vigna mungo HOM05D002613 ORTHO05D003140 5.8e-15 85.5 69 60.9
BraA09t38420Z Brassica rapa HOM05D002613 ORTHO05D003140 7.6e-15 85.1 86 51.2
Carub.0006s2943 Capsella rubella HOM05D002613 ORTHO05D003140 7.6e-15 85.1 382 24.9
Nitab4.5_0005477g0010 Nicotiana tabacum HOM05D002613 ORTHO05D003140 7.6e-15 85.1 420 25.2
Sp6g06830 Schrenkiella parvula HOM05D002613 ORTHO05D003140 7.6e-15 85.1 91 49.5
AT4G10620 Arabidopsis thaliana HOM05D002613 ORTHO05D003140 9.9e-15 84.7 354 25.7
Cpa.g.sc119.93 Carica papaya HOM05D002613 ORTHO05D003140 9.9e-15 84.7 81 51.9
Ciclev10014661m.g Citrus clementina HOM05D002613 ORTHO05D003140 9.9e-15 84.7 189 35.4
MD11G1014800 Malus domestica HOM05D002613 ORTHO05D003140 9.9e-15 84.7 145 37.9
A09p28590 Brassica napus HOM05D002613 ORTHO05D003140 1.3e-14 84.3 68 58.8
Lj2A687G20 Lonicera japonica HOM05D002613 ORTHO05D003140 1.7e-14 84.0 430 26.3
FAN25G0100 Fragaria x ananassa HOM05D002613 ORTHO05D003140 2.2e-14 83.6 443 24.4
Lalb_Chr01g0001471 Lupinus albus HOM05D002613 ORTHO05D003140 2.2e-14 83.6 67 59.7
Rhsim01G0186200 Rhododendron simsii HOM05D002613 ORTHO05D003140 2.2e-14 83.6 160 34.4
Cfa005683 Carpinus fangiana HOM05D002613 ORTHO05D003140 2.9e-14 83.2 80 48.8
Nn5g27657 Nelumbo nucifera HOM05D002613 ORTHO05D003140 2.9e-14 83.2 188 35.6
Lsat_1_v5_gn_1_68301 Lactuca sativa HOM05D002613 ORTHO05D003140 3.8e-14 82.8 84 50.0
Psat7g176240 Pisum sativum HOM05D002613 ORTHO05D003140 4.9e-14 82.4 40 87.5
CARHR255950 Cardamine hirsuta HOM05D002613 ORTHO05D003140 6.4e-14 82.0 324 26.2
CsaV3_4G023560 Cucumis sativus L. HOM05D002613 ORTHO05D003140 6.4e-14 82.0 70 60.0
PGR119G0585 Punica granatum HOM05D002613 ORTHO05D003140 6.4e-14 82.0 65 56.9
Cfa000964 Carpinus fangiana HOM05D002613 ORTHO05D003140 8.4e-14 81.6 40 87.5
PSO782G3240 Papaver somniferum HOM05D002613 ORTHO05D003140 8.4e-14 81.6 430 25.6
Hund21651 Selenicereus undatus HOM05D002613 ORTHO05D003140 1.1e-13 81.3 137 38.7
MELO3C014660.2 Cucumis melo HOM05D002613 ORTHO05D003140 1.4e-13 80.9 70 58.6
Medtr4g074870 Medicago truncatula HOM05D002613 ORTHO05D003140 1.4e-13 80.9 142 36.6
TPR.G4372 Trifolium pratense HOM05D002613 ORTHO05D003140 1.4e-13 80.9 68 55.9
HanXRQChr01g0021171 Helianthus annuus HOM05D002613 ORTHO05D003140 1.9e-13 80.5 179 34.6
PSO478G3133 Papaver somniferum HOM05D002613 ORTHO05D003140 1.9e-13 80.5 421 25.2
CAN.G140.30 Capsicum annuum HOM05D002613 ORTHO05D003140 2.4e-13 80.1 65 58.5
Peaxi162Scf00441g00056 Petunia axillaris HOM05D002613 ORTHO05D003140 3.2e-13 79.7 427 24.4
FAN16G0803 Fragaria x ananassa HOM05D002613 ORTHO05D003140 5.4e-13 79.0 297 25.6
FvH4_3g44540 Fragaria vesca HOM05D002613 ORTHO05D003140 7.1e-13 78.6 330 24.8
MBI01_g09941_MAGBIO Magnolia biondii HOM05D002613 ORTHO05D003140 7.1e-13 78.6 85 45.9
Aa31LG9G14560 Aethionema arabicum HOM05D002613 ORTHO05D003140 9.3e-13 78.2 73 49.3
Solyc01g006180.4 Solanum lycopersicum HOM05D002613 ORTHO05D003140 9.3e-13 78.2 40 82.5
Sopen01g002190 Solanum pennellii HOM05D002613 ORTHO05D003140 9.3e-13 78.2 40 82.5
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.2e-12 77.8 115 44.3
Aqoxy7G01203 Aquilegia oxysepala HOM05D002613 ORTHO05D003140 1.6e-12 77.4 419 23.6
PGSC0003DMG400032193 Solanum tuberosum HOM05D002613 ORTHO05D003140 1.6e-12 77.4 55 63.6
Cc01_g00960 Coffea canephora HOM05D002613 ORTHO05D003140 2.1e-12 77.0 430 24.9
Migut.N00611 Erythranthe guttata HOM05D002613 ORTHO05D003140 2.1e-12 77.0 40 82.5
CDE02G1852 Ceratophyllum demersum HOM05D002613 ORTHO05D003140 2.7e-12 76.6 116 40.5
AUR62015924 Chenopodium quinoa HOM05D002613 ORTHO05D003140 4.6e-12 75.9 115 40.9
Cfa007106 Carpinus fangiana HOM05D002613 ORTHO05D003140 6.0e-12 75.5 116 41.4
SGA_v2.0_scaffold3G01651 Striga asiatica HOM05D002613 ORTHO05D003140 6.0e-12 75.5 40 80.0
CSS0038007 Camellia sinensis var. sinensis HOM05D002613 ORTHO05D003140 7.9e-12 75.1 45 77.8
Manes.03G089300 Manihot esculenta HOM05D002613 ORTHO05D003140 7.9e-12 75.1 40 82.5
CDE01G0616 Ceratophyllum demersum HOM05D002613 ORTHO05D003140 1.0e-11 74.7 116 38.8
Nitab4.5_0001568g0020 Nicotiana tabacum HOM05D002613 ORTHO05D003140 1.0e-11 74.7 40 80.0
vmacro20878 Vaccinium macrocarpon HOM05D002613 ORTHO05D003140 1.0e-11 74.7 40 80.0
Oeu023942.3 Olea europaea HOM05D002613 ORTHO05D003140 1.3e-11 74.3 200 32.5
QL01p010162 Quercus lobata HOM05D002613 ORTHO05D003140 1.3e-11 74.3 50 68.0
Sc25g0002890 Simmondsia chinensis HOM05D002613 ORTHO05D003140 1.3e-11 74.3 115 40.9
EL10Ac1g01558 Beta vulgaris HOM05D002613 ORTHO05D003140 2.3e-11 73.6 115 40.9
DCAR_018990 Daucus carota HOM05D002613 ORTHO05D003140 2.3e-11 73.6 115 40.0
SHI30469 Sapria himalayana HOM05D002613 ORTHO05D003140 2.3e-11 73.6 67 53.7
QL01p010176 Quercus lobata HOM05D002613 ORTHO05D003140 3.9e-11 72.8 36 88.9
SalBow3G1390 Salvia bowleyana HOM05D002613 ORTHO05D003140 3.9e-11 72.8 40 77.5
TPR.G4363 Trifolium pratense HOM05D002613 ORTHO05D003140 3.9e-11 72.8 83 48.2
TAR362G1152 Trochodendron aralioides HOM05D002613 ORTHO05D003140 3.9e-11 72.8 45 77.8
AUR62024749 Chenopodium quinoa HOM05D002613 ORTHO05D003140 6.7e-11 72.0 40 75.0
ATR0749G082 Amborella trichopoda HOM05D002613 ORTHO05D003140 8.7e-11 71.6 40 75.0
MSTRG.20954 Avicennia marina HOM05D002613 ORTHO05D003140 1.1e-10 71.2 45 75.6
ECA248G2351 Erigeron canadensis HOM05D002613 ORTHO05D022051 3.3e-10 69.7 47 70.2
PSO173G0120 Papaver somniferum HOM05D002613 ORTHO05D003140 4.8e-09 65.9 44 65.9
CAN.G140.36 Capsicum annuum HOM05D002613 ORTHO05D003140 6.2e-09 65.5 164 31.1
unitig_26.g9581 Utricularia gibba HOM05D002613 ORTHO05D003140 8.1e-09 65.1 40 67.5
Migut.D02537 Erythranthe guttata HOM05D002613 ORTHO05D003140 2.4e-08 63.5 83 44.6
unitig_26.g9582 Utricularia gibba HOM05D002613 ORTHO05D003140 5.3e-08 62.4 45 60.0
HPP92_007660 Vanilla planifolia HOM05D002613 ORTHO05D003140 6.9e-08 62.0 87 42.5
Aqoxy3G02142 Aquilegia oxysepala HOM05D002613 ORTHO05D003140 9.0e-08 61.6 86 40.7
SEGI_02585 Sequoiadendron giganteum HOM05D002613 ORTHO05D003140 1.2e-07 61.2 40 70.0
MD12G1089400 Malus domestica HOM05D002613 ORTHO05D003140 2.0e-07 60.5 86 40.7
Zm00001eb311090 Zea mays HOM05D002613 ORTHO05D003140 2.0e-07 60.5 40 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3954 Anthoceros agrestis HOM05D002613 ORTHO05D003140 2.6e-07 60.1 40 65.0
Pp3c18_21830 Physcomitrium patens HOM05D002613 ORTHO05D003140 2.6e-07 60.1 40 65.0
Duzib128G0525 Durio zibethinus HOM05D002613 ORTHO05D003140 4.5e-07 59.3 86 38.4
Mapoly0074s0049 Marchantia polymorpha HOM05D002613 ORTHO05D003140 5.8e-07 58.9 40 62.5
Os09g0364500 Oryza sativa ssp. japonica HOM05D002613 ORTHO05D003140 5.8e-07 58.9 45 62.2
Sabra06G0030900 Salix brachista HOM05D002613 ORTHO05D003140 5.8e-07 58.9 95 40.0
SGA_v2.0_scaffold5G03102 Striga asiatica HOM05D002613 ORTHO05D003140 5.8e-07 58.9 39 61.5
CANSAT80G1176 Cannabis sativa HOM05D002613 ORTHO05D003140 1.3e-06 57.8 56 50.0
CANSAT80G1658 Cannabis sativa HOM05D002613 ORTHO05D003140 1.3e-06 57.8 56 50.0
RcHm_v2.0_Chr5g0081271 Rosa chinensis HOM05D002613 ORTHO05D003140 1.3e-06 57.8 44 59.1
CDE10G0807 Ceratophyllum demersum HOM05D002613 ORTHO05D003140 1.7e-06 57.4 44 56.8
CBR_g40564 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-06 57.4 40 62.5
RcHm_v2.0_Chr3g0484591 Rosa chinensis HOM05D002613 ORTHO05D003140 1.7e-06 57.4 85 37.6
AUR62026142 Chenopodium quinoa HOM05D002613 ORTHO05D003140 2.2e-06 57.0 89 40.4
Glyma.03G132000 Glycine max HOM05D002613 ORTHO05D003140 2.2e-06 57.0 39 59.0
Sc13g0001450 Simmondsia chinensis HOM05D002613 ORTHO05D003140 2.2e-06 57.0 33 69.7
ATR0693G257 Amborella trichopoda HOM05D002613 ORTHO05D003140 2.9e-06 56.6 85 38.8
AUR62030392 Chenopodium quinoa HOM05D002613 ORTHO05D003140 2.9e-06 56.6 56 51.8
Potri.006G044700 Populus trichocarpa HOM05D002613 ORTHO05D003140 2.9e-06 56.6 87 40.2
arahy.Tifrunner.gnm1.ann1.5ZDB9J Arachis hypogaea HOM05D002613 ORTHO05D003140 3.8e-06 56.2 45 53.3
arahy.Tifrunner.gnm1.ann1.9G159B Arachis hypogaea HOM05D002613 ORTHO05D003140 3.8e-06 56.2 45 53.3
MELO3C011684.2 Cucumis melo HOM05D002613 ORTHO05D003140 3.8e-06 56.2 87 37.9
Gohir.A09G119700 Gossypium hirsutum HOM05D002613 ORTHO05D003140 3.8e-06 56.2 38 60.5
Prupe.7G049400 Prunus persica HOM05D002613 ORTHO05D003140 3.8e-06 56.2 87 40.2
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 3.8e-06 56.2 56 42.9
Lj1C1121G13 Lonicera japonica HOM05D002613 ORTHO05D003140 4.9e-06 55.8 39 59.0
Manes.08G054900 Manihot esculenta HOM05D002613 ORTHO05D003140 4.9e-06 55.8 39 56.4
Psat3g075680 Pisum sativum HOM05D002613 ORTHO05D003140 4.9e-06 55.8 39 56.4
SMO340G0110 Selaginella moellendorffii HOM05D002613 ORTHO05D003140 4.9e-06 55.8 40 60.0
TAR375G1154 Trochodendron aralioides HOM05D002613 ORTHO05D003140 4.9e-06 55.8 44 52.3
TAR626G1373 Trochodendron aralioides HOM05D002613 ORTHO05D022051 4.9e-06 55.8 44 52.3
A03p29050 Brassica napus HOM05D002613 ORTHO05D022051 6.4e-06 55.5 43 58.1
GSVIVG01033559001 Vitis vinifera HOM05D002613 ORTHO05D003140 6.4e-06 55.5 87 37.9
Atru.chr1.1250 Acer truncatum HOM05D002613 ORTHO05D003140 8.4e-06 55.1 86 36.0
arahy.Tifrunner.gnm1.ann1.EM8ZKT Arachis hypogaea HOM05D002613 ORTHO05D003140 8.4e-06 55.1 38 57.9
arahy.Tifrunner.gnm1.ann1.TE5HJ9 Arachis hypogaea HOM05D002613 ORTHO05D003140 8.4e-06 55.1 38 57.9
CSS0039271 Camellia sinensis var. sinensis HOM05D002613 ORTHO05D003140 8.4e-06 55.1 86 38.4
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 8.4e-06 55.1 38 57.9
Haze_19756 Corylus avellana HOM05D002613 ORTHO05D003140 8.4e-06 55.1 38 57.9
TPR.G32749 Trifolium pratense HOM05D002613 ORTHO05D003140 8.4e-06 55.1 39 56.4


User provided reference genes

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