Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 7.4e-107 390.6 202 100.0
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.7e-93 345.5 203 88.2
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-92 343.2 203 87.7
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-88 329.7 202 83.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.9e-86 322.8 202 82.2
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 4.2e-86 321.6 203 82.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.5e-80 302.0 206 77.2
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.5e-80 302.0 202 77.2
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.7e-79 299.7 204 77.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.1e-78 297.0 202 75.2
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-78 297.0 203 74.9
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.9e-78 296.2 202 76.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.9e-78 296.2 202 76.2
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 7.2e-78 294.3 202 75.7
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.6e-77 293.1 202 75.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 4.7e-77 291.6 202 74.3
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.7e-77 291.6 207 72.9
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 6.1e-77 291.2 202 74.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 8.0e-77 290.8 202 74.3
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.0e-76 288.9 202 74.8
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 4.0e-76 288.5 206 74.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.8e-76 287.7 206 74.8
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.0e-75 286.2 203 75.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.6e-75 285.8 202 72.8
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 5.7e-75 284.6 201 75.6
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.5e-75 284.3 202 73.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.7e-74 283.1 204 73.0
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.7e-74 283.1 203 72.9
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.7e-74 283.1 202 73.8
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.4e-73 280.0 236 66.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.4e-73 280.0 209 71.8
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.4e-73 279.3 202 72.8
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.2e-73 278.9 206 73.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 7.0e-73 277.7 202 69.8
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.0e-73 277.7 206 73.3
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-72 276.9 203 71.4
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.2e-72 276.9 224 69.2
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.0e-72 276.2 206 70.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.7e-72 275.8 202 71.3
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.5e-72 275.4 206 72.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.5e-72 275.0 204 71.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.8e-72 274.2 186 75.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.7e-71 273.1 196 72.4
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.3e-71 272.7 202 71.8
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.3e-71 272.7 221 68.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.9e-71 271.9 202 69.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.0e-71 271.6 202 71.8
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.5e-70 269.2 202 68.3
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 5.6e-70 268.1 202 70.8
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.1e-69 266.2 203 70.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.8e-69 265.8 202 68.8
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.8e-69 265.8 202 69.8
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-68 263.8 179 76.0
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-68 263.8 179 76.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.4e-68 263.5 202 69.3
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.2e-68 261.5 173 76.3
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.8e-68 261.2 212 66.5
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 6.8e-68 261.2 179 77.1
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 7.5e-67 257.7 211 69.7
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.2e-66 256.1 173 75.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.2e-66 256.1 189 70.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.9e-66 255.8 202 68.3
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.4e-66 254.6 153 83.7
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-65 253.8 153 83.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.4e-65 252.7 152 84.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 7.0e-65 251.1 147 86.4
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.2e-64 250.4 151 82.1
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.2e-64 250.4 153 81.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.6e-64 250.0 212 64.2
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.6e-64 250.0 248 57.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.5e-64 248.8 209 66.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.5e-64 248.8 160 77.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.0e-63 247.3 176 72.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.3e-63 246.9 170 75.3
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 3.0e-63 245.7 197 67.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 6.6e-63 244.6 151 82.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.1e-62 243.8 151 81.5
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.5e-62 243.4 154 76.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.9e-62 243.0 151 82.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.9e-62 243.0 154 76.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 5.6e-62 241.5 208 64.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.3e-62 241.1 211 64.5
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.6e-61 240.0 205 63.4
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.4e-60 236.9 151 79.5
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 153 77.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.3e-60 236.1 241 58.5
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.3e-60 236.1 151 78.1
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 2.3e-60 236.1 215 61.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 3.1e-60 235.7 211 63.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.0e-60 235.3 154 76.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.2e-59 233.8 202 62.4
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.5e-59 233.4 184 67.4
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 3.4e-59 232.3 148 78.4
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.5e-59 231.1 205 63.4
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 7.5e-59 231.1 156 76.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 9.8e-59 230.7 170 70.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 9.8e-59 230.7 170 70.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.2e-58 229.6 213 60.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.2e-58 229.6 190 64.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.2e-58 229.6 151 76.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 8.3e-58 227.6 188 66.0
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 8.3e-58 227.6 151 78.8
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-57 227.3 153 76.5
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 4.1e-57 225.3 189 63.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.1e-57 224.6 187 65.2
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 7.1e-57 224.6 148 75.7
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 9.2e-57 224.2 212 60.4
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.2e-57 224.2 179 66.5
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 9.2e-57 224.2 162 71.6
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-56 223.0 204 64.2
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-56 223.0 204 64.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-56 223.0 204 64.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.7e-56 222.6 152 75.7
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 6.0e-56 221.5 150 74.0
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 7.8e-56 221.1 147 74.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.0e-55 220.7 144 76.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.0e-55 220.7 202 61.9
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-55 219.9 204 63.2
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.7e-55 219.9 204 61.3
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 3.9e-55 218.8 202 58.9
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.6e-55 218.0 188 63.8
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.9e-54 216.5 154 71.4
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.3e-54 214.5 170 65.3
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 4.7e-53 211.8 220 59.5
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 4.7e-53 211.8 220 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.3e-52 209.5 150 69.3
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 5.8e-51 204.9 125 81.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 9.9e-51 204.1 166 65.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.7e-50 203.4 195 60.0
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.9e-50 202.6 148 69.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.9e-50 202.6 170 62.4
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-50 202.2 220 57.3
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.4e-49 199.5 217 51.6
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.1e-48 196.4 206 55.8
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.0e-47 194.1 106 90.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 5.1e-47 191.8 125 75.2
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.1e-45 186.4 148 64.2
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 8.1e-45 184.5 145 67.6
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.1e-44 184.1 194 51.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.4e-44 183.0 159 62.3
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 6.8e-44 181.4 151 65.6
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 8.9e-44 181.0 189 55.0
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.5e-43 180.3 152 59.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.4e-41 173.7 152 59.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 7.1e-41 171.4 144 63.9
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-40 170.6 112 76.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-39 165.6 162 58.0
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-35 154.1 101 73.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.5e-35 153.7 95 81.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.3e-34 150.6 91 83.5
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 4.2e-33 145.6 82 85.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.5e-30 136.3 134 57.5
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 7.3e-30 134.8 122 62.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.2e-25 119.4 152 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 9.0e-20 101.3 98 52.0
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 6.5e-18 95.1 102 56.9
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.1e-17 94.4 142 36.6
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.5e-17 93.2 68 67.6
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 6.0e-16 88.6 123 39.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 4.3e-14 82.4 77 58.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.8e-11 72.0 68 58.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 3.2e-09 66.2 189 26.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 5.5e-09 65.5 58 56.9
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 1.1e-06 57.8 84 48.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 4.3e-06 55.8 32 75.0
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 9.7e-06 54.7 32 78.1


User provided reference genes

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